PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P29170_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 575aa    MW: 64441.3 Da    PI: 4.3575
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P29170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.91e-4991401128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lp GfrF+Ptd elv++yLk k++g+  ++ evi+e+d++k+ePwd p k  +k+ + ew+fFs++d+ky++g+r+nrat++gyWkat
  GSMUA_Achr4P29170_001   9 LPLGFRFRPTDAELVNHYLKGKITGRIKSEIEVIPEIDVCKCEPWDVPdKsLIKSIDPEWFFFSPKDRKYPSGNRSNRATEAGYWKAT 96 
                            699***********************9888899**************96446666778****************************** PP

                    NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            gkd++++s+  ++   g+kktLvf++grapkg++t+W+mheyr 
  GSMUA_Achr4P29170_001  97 GKDRTIKSRspGSMILGMKKTLVFHRGRAPKGVRTNWIMHEYRT 140
                            ********9888888***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-575161IPR003441NAC domain
PROSITE profilePS5100557.3169161IPR003441NAC domain
PfamPF023652.3E-2610139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MDAVSVESLP LGFRFRPTDA ELVNHYLKGK ITGRIKSEIE VIPEIDVCKC EPWDVPDKSL  60
IKSIDPEWFF FSPKDRKYPS GNRSNRATEA GYWKATGKDR TIKSRSPGSM ILGMKKTLVF  120
HRGRAPKGVR TNWIMHEYRT TEPEYESGEQ GGYVLCRLFR KPEEQTLVSE INDCMEKNVD  180
EMESTGLSPS PTIVSPGETQ HGSEAAEEVL TSLNQNLTGL DLQENLQPLP RIFEMPPSAI  240
NELVADKMAF ANSCLLKPEE SYCNATIASD VADQGTDVAT EVDSLLDDFA QYLGQECDKL  300
GPDDYHISSP IVSPMGHSFY DGVNQGLLQE LNQFDNIEQD SVTEFLDAVL FNQEECSHEA  360
SSACRGLIME FEAEDRNCLI MDDSHWDTLS GKDSRTGSDE DTEVTTFEDG IGFYEEICRL  420
PVGSSHLSQE NSYNVPTEQD TWQISVFPNQ KFSRNISSMD SSAGSLHQES TNTDNSDRAE  480
IQIRVRKNLT DSDYLIKQQG SAMRRLRLQK FIHNGSAPRT VHALSSNNDD SDKSGVTEAS  540
EVLEHQFDEE KLVSGLTAED THGNKQQTML QLEIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-4621648171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018681067.10.0PREDICTED: NAC domain-containing protein 14-like isoform X2
TrEMBLM0ST290.0M0ST29_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P29170_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.18e-78NAC 014