PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P29140_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 400aa    MW: 43238.1 Da    PI: 6.6056
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P29140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.9e-19319353135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  GSMUA_Achr4P29140_001 319 CSHCGAQKTPQWRAGPLGAKTLCNACGVRFKSGRL 353
                            *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.714313349IPR000679Zinc finger, GATA-type
SMARTSM004017.8E-16313367IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-14315376No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14317351IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.31E-13318360No hitNo description
PROSITE patternPS003440319344IPR000679Zinc finger, GATA-type
PfamPF003201.7E-16319353IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MFHQTLIPSS VSSSPSSTLS SLFFNPSSAS FPVLLGPLQP PSLVPPLVYS SCTQVENEAR  60
MEEALKSSLR PESGLSSGQQ QQHQHQRQQN KGTLSEEGGW SAERGNLCGE GFSVDDLLNL  120
GDYAENDKEA EVTEVREEVE AKAEVADAEH RGISDSSSPW DFDGFAFFSL VLWLRFVQAH  180
DAEELEWVSY IIDDSLSEFP HCPAVGGDHF PSPPQSHKKT EEPPAAAPQV ASSLDSAVCG  240
LSTEGMASVK AKRSKRHRPR PAHSPARYMS VPVLFADSLS SPTNTCSSAS SSSSTSCLIY  300
DHHPPKPSPT ASGSGDRRCS HCGAQKTPQW RAGPLGAKTL CNACGVRFKS GRLLPEYRPA  360
CSPTFVSHIH SNSHRKVLEM RRKKEAQLPL SPASAPVASF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260419e-78AC226041.1 Musa acuminata clone BAC MA4-4L11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397634.10.0PREDICTED: GATA transcription factor 5-like
TrEMBLM0ST260.0M0ST26_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P29140_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-39GATA transcription factor 5