PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P29130_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 699aa    MW: 77871.1 Da    PI: 9.6438
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P29130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix34.74.5e-11111148138
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm 38 
                            rW+ qe+l+L+++r+em+ ++r++ lk+plWeevs+  
  GSMUA_Achr4P29130_001 111 RWPLQETLTLLKIRSEMDAAFRDATLKAPLWEEVSRER 148
                            8**********************************875 PP

2trihelix44.93.1e-141982473687
               trihelix  36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            +k++e g++r++k+Ckek+en+nk+yk++keg+ +r++++   +++f+qlea
  GSMUA_Achr4P29130_001 198 EKLAELGYKRTAKKCKEKFENVNKYYKRTKEGRAGRQDGK--GYRFFSQLEA 247
                            5779*******************************85555..5******985 PP

3trihelix107.11.2e-33467552187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW+k ev+aLi++r+e+e++++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tc+yf+ql+a
  GSMUA_Achr4P29130_001 467 RWPKAEVHALIKLRSELESKYQETGPKGPLWEEISAGMQRLGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCSYFHQLDA 552
                            8*********************************************************************8.99***********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071783108222IPR001005SANT/Myb domain
PROSITE profilePS500904.077110189IPR017877Myb-like domain
CDDcd122038.93E-18110227No hitNo description
PfamPF138372.3E-10197248No hitNo description
PROSITE profilePS500907.608460524IPR017877Myb-like domain
SMARTSM007170.0033464526IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-4465523IPR009057Homeodomain-like
PfamPF138372.0E-23466553No hitNo description
CDDcd122031.02E-29466531No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MRGSFSLMYH ELQQVNYTGR ETNTILVAEK EKAKKDMQLQ RGGAQYGVPL PEIPGREAEA  60
ASPISGRPPA GAPLANFDKV GPAAAGNSPD DEVLATGEEA ERGGGGVTGN RWPLQETLTL  120
LKIRSEMDAA FRDATLKAPL WEEVSRERER EREREIFSFP LSSSRDSQVT IWRQVRTTDS  180
LLQQWLQQLS YFSGERNEKL AELGYKRTAK KCKEKFENVN KYYKRTKEGR AGRQDGKGYR  240
FFSQLEALRS GSSAAVTPAA PVPSTLVATS SAFSASLLTP PGGAQRISSS AAVAVSAAAA  300
GIGFSSNSSS SEWFESDDEE TDGESQEGRK RKSNGGGSGP SRKMMPFFHR LMKQVMERQE  360
AMQQRFLDAM EKREQDRMIR DEAWRRQEMT RLNREQELLE QEWAMASSRD TAIISYLQKL  420
TGRTIPMPTM SAIPLSISPF PQQQSHTPPP QPAAPQLPSE PMSSSSRWPK AEVHALIKLR  480
SELESKYQET GPKGPLWEEI SAGMQRLGYK RSAKRCKEKW ENINKYFKKV KESNKKRPED  540
SKTCSYFHQL DALYRNKLLG TGNTMGSPAS NQRQSDTPRN MSQQQAPPPP PPPPQPAAEP  600
ESKNATRTQT TNGSLHMIFS DQGLEKVSTV INDYDKLDQT DSDNMNQDDD DDEGKLHYKI  660
QFQRKSMSAG GGGNPSTAAS ATARGEQEKP VQRGRLNTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205213KRTAKKCKE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0252962e-67AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence.
GenBankAP0149662e-67AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126182e-67CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankCT8305452e-67CT830545.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA218F06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398860.10.0PREDICTED: trihelix transcription factor GTL1-like
TrEMBLM0ST250.0M0ST25_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P29130_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.26e-63Trihelix family protein