PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P29130_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Trihelix | ||||||||
Protein Properties | Length: 699aa MW: 77871.1 Da PI: 9.6438 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 34.7 | 4.5e-11 | 111 | 148 | 1 | 38 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm 38 rW+ qe+l+L+++r+em+ ++r++ lk+plWeevs+ GSMUA_Achr4P29130_001 111 RWPLQETLTLLKIRSEMDAAFRDATLKAPLWEEVSRER 148 8**********************************875 PP | |||||||
2 | trihelix | 44.9 | 3.1e-14 | 198 | 247 | 36 | 87 |
trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +k++e g++r++k+Ckek+en+nk+yk++keg+ +r++++ +++f+qlea GSMUA_Achr4P29130_001 198 EKLAELGYKRTAKKCKEKFENVNKYYKRTKEGRAGRQDGK--GYRFFSQLEA 247 5779*******************************85555..5******985 PP | |||||||
3 | trihelix | 107.1 | 1.2e-33 | 467 | 552 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+e+e++++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tc+yf+ql+a GSMUA_Achr4P29130_001 467 RWPKAEVHALIKLRSELESKYQETGPKGPLWEEISAGMQRLGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCSYFHQLDA 552 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 83 | 108 | 222 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 4.077 | 110 | 189 | IPR017877 | Myb-like domain |
CDD | cd12203 | 8.93E-18 | 110 | 227 | No hit | No description |
Pfam | PF13837 | 2.3E-10 | 197 | 248 | No hit | No description |
PROSITE profile | PS50090 | 7.608 | 460 | 524 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0033 | 464 | 526 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-4 | 465 | 523 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.0E-23 | 466 | 553 | No hit | No description |
CDD | cd12203 | 1.02E-29 | 466 | 531 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MRGSFSLMYH ELQQVNYTGR ETNTILVAEK EKAKKDMQLQ RGGAQYGVPL PEIPGREAEA 60 ASPISGRPPA GAPLANFDKV GPAAAGNSPD DEVLATGEEA ERGGGGVTGN RWPLQETLTL 120 LKIRSEMDAA FRDATLKAPL WEEVSRERER EREREIFSFP LSSSRDSQVT IWRQVRTTDS 180 LLQQWLQQLS YFSGERNEKL AELGYKRTAK KCKEKFENVN KYYKRTKEGR AGRQDGKGYR 240 FFSQLEALRS GSSAAVTPAA PVPSTLVATS SAFSASLLTP PGGAQRISSS AAVAVSAAAA 300 GIGFSSNSSS SEWFESDDEE TDGESQEGRK RKSNGGGSGP SRKMMPFFHR LMKQVMERQE 360 AMQQRFLDAM EKREQDRMIR DEAWRRQEMT RLNREQELLE QEWAMASSRD TAIISYLQKL 420 TGRTIPMPTM SAIPLSISPF PQQQSHTPPP QPAAPQLPSE PMSSSSRWPK AEVHALIKLR 480 SELESKYQET GPKGPLWEEI SAGMQRLGYK RSAKRCKEKW ENINKYFKKV KESNKKRPED 540 SKTCSYFHQL DALYRNKLLG TGNTMGSPAS NQRQSDTPRN MSQQQAPPPP PPPPQPAAEP 600 ESKNATRTQT TNGSLHMIFS DQGLEKVSTV INDYDKLDQT DSDNMNQDDD DDEGKLHYKI 660 QFQRKSMSAG GGGNPSTAAS ATARGEQEKP VQRGRLNTK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 213 | KRTAKKCKE |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC025296 | 2e-67 | AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 2e-67 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 2e-67 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. | |||
GenBank | CT830545 | 2e-67 | CT830545.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA218F06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009398860.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1-like | ||||
TrEMBL | M0ST25 | 0.0 | M0ST25_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P29130_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 6e-63 | Trihelix family protein |