PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P29100_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 271aa    MW: 28954.4 Da    PI: 8.0741
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P29100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35311212101
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++++d+ ++++isw+e+g++fvv+++ efa++vLpk Fkh+nf+SFvRQLn+YgF+k+ +++         weF+++ F++g
  GSMUA_Achr4P29100_001  31 FLTKTYQLVDDPYFDDVISWNEDGSTFVVWQPAEFARDVLPKNFKHNNFSSFVRQLNTYGFRKIASDR---------WEFANECFRRG 109
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkk 101
                            +k ll++i+r+k
  GSMUA_Achr4P29100_001 110 EKGLLCDIHRRK 121
                            **********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3724115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-5527120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.07E-3528120IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.2E-193154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3131120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1706.9E-4154183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGHPAEAPSA AEESVPPPPP HEGQRTIPTP FLTKTYQLVD DPYFDDVISW NEDGSTFVVW  60
QPAEFARDVL PKNFKHNNFS SFVRQLNTYG FRKIASDRWE FANECFRRGE KGLLCDIHRR  120
KLSPTAIPSA APANRPEPAA VVAWASPGSS GGASELAEEN NRLRRENKQL SQELGQMKSL  180
CTNIMQLMAK YALFRKNGAA ATTAVSGGGG ASAAPPLEAG GSSGERGSTR LFGVSIGFKR  240
NRGEDGGVAS TSAAVMGDDG MVPVLGRSAS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-241412013129Heat shock factor protein 1
5d5v_B1e-241412013129Heat shock factor protein 1
5d5v_D1e-241412013129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397638.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ6Z9C86e-79HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLM0ST220.0M0ST22_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P29100_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-60heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]