PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr4P28850_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 30710.4 Da PI: 4.6941 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.4e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +++++G +W++ ++ g+ R++k+c++rw +yl GSMUA_Achr4P28850_001 16 KGTWTEEEDMKLIAYIHKYGHQNWRALPKLAGLLRCGKSCRLRWTNYL 63 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++ +++++++lG++ W++Ia+ ++ gRt++++k+ w+++l GSMUA_Achr4P28850_001 69 RGNFTKDEEDTIIKLHALLGNK-WSKIASFLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-24 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.048 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.62E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-14 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.40E-11 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.485 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-26 | 67 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.45E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 272 aa Download sequence Send to blast |
MGRGRAPCCE KIGLNKGTWT EEEDMKLIAY IHKYGHQNWR ALPKLAGLLR CGKSCRLRWT 60 NYLRPDIKRG NFTKDEEDTI IKLHALLGNK WSKIASFLPG RTDNEIKNVW NTHLKKRAAS 120 GEQQPVTNGA STSTGDRMAG AIEIPVDPTV DMFVILDDAL STSMQSNEME DSVFLETLGV 180 RQDSLWTSPQ KQSRGSVASV GTDGPSIPDV RQPEACEEAD GTRRDGQREE WLDYLEKELG 240 LRDEGEAWDR WDEMEGDLVA TFLQDDIFSP YD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-28 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018680351.1 | 0.0 | PREDICTED: myb-related protein 330-like | ||||
TrEMBL | M0SSZ7 | 0.0 | M0SSZ7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P28850_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G16490.1 | 6e-68 | myb domain protein 58 |