PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P28070_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 372aa MW: 41176.4 Da PI: 4.4676 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r +lg+f+taeeAa+a+++a+ l+g GSMUA_Achr4P28070_001 42 RFVGVRQRP-SGRWVAEIKDtI----QKIRMWLGTFDTAEEAARAYDEAACLLRG 91 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.99E-30 | 41 | 98 | No hit | No description |
SMART | SM00380 | 6.4E-34 | 42 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-27 | 42 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-19 | 42 | 99 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.48 | 42 | 99 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.2E-13 | 42 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MARKRRCTDG VDGKEDPDGG ATRWDEATAM EALGDVRRAR KRFVGVRQRP SGRWVAEIKD 60 TIQKIRMWLG TFDTAEEAAR AYDEAACLLR GANTRTNFWP CSSLQPSKPS VLPSKITNLL 120 LMRLKARNHS ALVEMQQQQQ QPQLQQPGEE AHRPQYEDGA EEGDDIHFAD FLNDPSNSML 180 HLSHADLGGA DYMHDSIQES YTYKDGDHVD FTSDYELGGA VEFGGCGEDE ESLDVGVMDF 240 GFMDEVQESS AAVKRMKYER KISASLYALN GISEYLKLQL GERRGGRMED HLSALTSACR 300 EQQQGYEMQL VEGEGVEVEA ENSSSSYSSS YITTICSSSS TSSSQSPPPS SALSSGSEGE 360 LFFWSSLDLP PI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009397745.1 | 0.0 | PREDICTED: uncharacterized protein LOC103982524 | ||||
TrEMBL | M0SSR9 | 0.0 | M0SSR9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P28070_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 8e-23 | related to AP2 11 |