PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P27420_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 367aa    MW: 40227 Da    PI: 6.9457
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P27420_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.8e-31170228259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
  GSMUA_Achr4P27420_001 170 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSDHNHP 228
                            699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.856164230IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.5E-31165230IPR003657WRKY domain
SuperFamilySSF1182903.79E-26167230IPR003657WRKY domain
SMARTSM007748.6E-37169229IPR003657WRKY domain
PfamPF031061.6E-25171228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MCDYFWHRME NDSGELADIV RAGGRSGPSN TEFEPVAAEW RLPSHPPVFF PTRAEIPTNA  60
FGDPFLLLTS EQEMKGPCNV FSRAVHQISP GGSSMSSKPS LLPSRLVRPS PASSGSIAGP  120
ADHGGGVQQI SSPRPPVIKR RKNQAKKVVC IPAPPPAAAG NRLSGEVVPS DLWAWRKYGQ  180
KPIKGSPYPR GYYRCSSSKG CSARKQVERS RTDPNMLVIT YTSDHNHPWP TQRNALAGST  240
RSQPSKNGPR NNLKEEPNKE TTSSSGHMVK EEEIGEMEKT IEQAGDTLGF DPMIHPSYKS  300
DQPDDLFAGL AELEGDPMSL IFSRGFMESK PDEEKGVGAS DAFDMFDWAG GSSRSQEEEV  360
YYKTLEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-24143231380Disease resistance protein RRS1
5w3x_D1e-24143231380Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397814.10.0PREDICTED: probable WRKY transcription factor 14
SwissprotO647471e-70WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLM0SSK40.0M0SSK4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P27420_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-64WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]