PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P27160_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Dof | ||||||||
Protein Properties | Length: 280aa MW: 30618.2 Da PI: 8.951 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.6 | 6.3e-39 | 35 | 93 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 kek l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ GSMUA_Achr4P27160_001 35 KEKVLNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGTLRNVPVGGGSRKNKR 93 67899****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-28 | 32 | 93 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.3E-34 | 37 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.264 | 39 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 41 | 77 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MEAQFASSTT EATTSTSRCT TTRPQVTERR PRPHKEKVLN CPRCNSTNTK FCYYNNYSLT 60 QPRYFCKSCR RYWTEGGTLR NVPVGGGSRK NKRNFVSSAA TNSSSSSPII APTATASTSR 120 KLHADLIPPY ISLSASSEAP KFHEGQDLNL AFRQQDLPEY NYPNLESSSA INNTYFSAME 180 LLKSEMTARG LGPFMPMSAY PTGFALQEFR PPTLSFPLDG IGGRAGYGSL PVVEESAGGK 240 LPFPLEDLKP VVPSNSVADQ FEQNRGQGGD PPGFWNGIIG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009397850.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6 isoform X1 | ||||
Refseq | XP_009397851.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6 isoform X2 | ||||
Swissprot | Q9SXG8 | 8e-49 | DOF1_ORYSJ; Dof zinc finger protein 1 | ||||
TrEMBL | M0SSH8 | 0.0 | M0SSH8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P27160_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 8e-43 | Dof family protein |
Publications ? help Back to Top | |||
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