PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P26980_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 17692.7 Da PI: 4.4635 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.3 | 5.1e-15 | 2 | 44 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+ +++g GSMUA_Achr4P26980_001 2 RSWGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAAMAIKG 44 57**********843...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.8E-30 | 1 | 58 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-27 | 1 | 53 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.49E-27 | 1 | 54 | No hit | No description |
PROSITE profile | PS51032 | 19.77 | 1 | 52 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 2 | 53 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-9 | 2 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MRSWGKWVSE IREPRKKSRI WLGTFPTAEM AARAHDVAAM AIKGQSAHLN FPELAAELPR 60 PATASPKDIQ AAAALAAAAT FCARGDLTPC TSSECSGPGQ AEPPASSSPT GDIDDALFDL 120 PDLLLDLRQG FRYSSSSSSS WLPSNDDDGV EFRIEEPFLW EYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-14 | 2 | 53 | 21 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009397875.1 | 1e-117 | PREDICTED: ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q8LBQ7 | 1e-46 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | M0SSG0 | 1e-114 | M0SSG0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P26980_001 | 1e-115 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-28 | ERF family protein |
Publications ? help Back to Top | |||
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