PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P26920_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 273aa MW: 29714 Da PI: 6.5946

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P26920_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00099	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C ++F++ L H+r+H GSMUA_Achr4P26920_001 4 HTCNLCFRRFPNGRALGGHMRSH 26 79********************9 PP
2	zf-C2H2	11	0.0014	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H GSMUA_Achr4P26920_001 152 YQCGACKKVFRSYQALGGHRASH 174 9***********99999998887 PP
3	zf-C2H2	10.8	0.0015	204	226	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H GSMUA_Achr4P26920_001 204 HECPFCFRVFSSGQALGGHKRSH 226 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	5.4E-6	3	26	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.089	4	26	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.829	4	26	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.15	152	174	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.473	152	179	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.15E-7	152	226	No hit	No description
Pfam	PF13912	7.6E-10	152	176	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	154	174	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.4E-9	203	226	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.2	204	226	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.245	204	231	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	206	226	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDRHTCNLCF RRFPNGRALG GHMRSHVISA APPVPQAQHP GNSSASISSD RPAAEQEVGE 60 EAEEEVGGSY GLRMNPRKSF RLVDPQFSSS ENRRRSKRSR RDTASPTEQP EAEPASSVSD 120 ATPEEDVALC LMMLSRDSWA TAAAEEEARL RYQCGACKKV FRSYQALGGH RASHKKTNGC 180 VPAVEPRIYG EADSADANAD AKVHECPFCF RVFSSGQALG GHKRSHFTSS ATMLTENSPV 240 IGMIDLNFPA PSMDDVELSA VSDMDFVANP RPN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018681056.1	1e-150	PREDICTED: zinc finger protein ZAT4-like
TrEMBL	M0SSF4	0.0	M0SSF4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P26920_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3518	33	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-49	C2H2-like zinc finger protein