PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P25960_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 801aa    MW: 90159.2 Da    PI: 5.9201
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P25960_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.98e-23128228198
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+
  GSMUA_Achr4P25960_001 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVL 213
                            99*****************************8544444..48********************************************** PP

                            EEE-SSSEE..EEEEE- CS
                     B3  82 Fkldgrsefelvvkvfr 98 
                            F   ++++ +l+++++ 
  GSMUA_Achr4P25960_001 214 FI--WNEKNQLLLGIRH 228
                            **..8888889999986 PP
2Auxin_resp1188e-39254337183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+t+s F+++YnPras+seFv++++k+ ka+   +vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wr ++
  GSMUA_Achr4P25960_001 254 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhARVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRTVQ 337
                            79*******************************987589******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-48114257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-42117243IPR015300DNA-binding pseudobarrel domain
CDDcd100175.09E-21127220No hitNo description
SMARTSM010193.5E-23128230IPR003340B3 DNA binding domain
PfamPF023624.5E-21128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.083128230IPR003340B3 DNA binding domain
PfamPF065076.4E-34254337IPR010525Auxin response factor
SuperFamilySSF542771.52E-7699778No hitNo description
PROSITE profilePS5174524.555704788IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MKLSTVGISQ QAPEEEEKRC LDSELWHACA GPLVCLPTAG TRVVYFPQGH SEQVAASTNK  60
EVEGHIPNYP SLLPQLLCQL HNVTLHADVE TDEVYAQMTL QPLSPEEQKD AYFPMEMGIA  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRHAN RPQTSTPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LSKYIKAVFH ARVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRTVQVGW DESTAGERQR RVSLWEIEPL  360
TTFPMYPSLF PIGLRRSWHP GASFPHDNRE EFNTFMWPRG VPVDQGMYSL NLPSLGTGPW  420
IQQRHETLLL GSEFDQYQAM CPLAFQDIRC GDILKQQFLQ NQQPIQFLQQ SCTSSSLFKP  480
QDNQQQIVNP QPQCLTENHR HPVPYQQLQP PHTEQQKQLP QEANVYTQAF TMHNNHVQRQ  540
SALPSPLFEN STIPDSSLNF SSVPTPISDQ DILGSAYREG NVSGSNYSRL NQSMINHPGQ  600
KSWELNFTKS QMISFDGAAL LSSFPAKNST VGNDNFTDTQ TCTLFGFSKD SSSLLNSALS  660
NSGTVNDVST MPYTSSCFQN SFYGYLDDSP SLLHGAGETD LQSQTFVKVY KSGSVGRSLD  720
ISRFSNYEEL REELGQMFGI EGLLEDPLRS GWQLVFVDRE NDVLLLGDDP WESFVNNVWY  780
IKILSPEDVL KMGKQGVDSF C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601735847388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397956.10.0PREDICTED: auxin response factor 12-like isoform X1
RefseqXP_009397957.10.0PREDICTED: auxin response factor 12-like isoform X1
RefseqXP_018680638.10.0PREDICTED: auxin response factor 12-like isoform X1
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLM0SS570.0M0SS57_MUSAM; Auxin response factor
STRINGGSMUA_Achr4P25960_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8