PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P25530_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WOX | ||||||||
Protein Properties | Length: 211aa MW: 23110.9 Da PI: 4.9755 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.2 | 5.1e-22 | 76 | 136 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ F++ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ GSMUA_Achr4P25530_001 76 RQRWTPTPTQLQILETIFYEgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 136 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 103.1 | 2e-33 | 75 | 138 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp+Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++k+ GSMUA_Achr4P25530_001 75 SRQRWTPTPTQLQILETIFYEGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKK 138 689***********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.04E-19 | 69 | 139 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-18 | 71 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.289 | 72 | 137 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-15 | 74 | 141 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.98E-15 | 76 | 138 | No hit | No description |
Pfam | PF00046 | 8.5E-20 | 76 | 136 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEEGVAEEGA VCAKVMTDEQ MEVLRKQIAA YATICEQLVE MHRAIAAQQD SLSGMRLGSL 60 CSDPLMAPGV AKLSSRQRWT PTPTQLQILE TIFYEGNGTP SKQKIKEITS ELSQHGQISE 120 TNVYNWFQNR RARSKRKKQP GAGPNAAESE AEVESLNEKK AKAHGNLSPT VDDGPFQSPD 180 ISSELRFADP ESNGSQSMFA LGDISKYGDA F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00617 | PBM | Transfer from AT4G35550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009397998.1 | 1e-158 | PREDICTED: WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 2e-73 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | M0SS14 | 1e-156 | M0SS14_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P25530_001 | 1e-157 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3898 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 4e-68 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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