PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P25260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 279aa    MW: 31164.8 Da    PI: 7.4132
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P25260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.3e-161462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           rg+W++eEd +l++ ++++G g +W + +++ g++R++k+c++rw++yl
  GSMUA_Achr4P25260_001 14 RGPWSPEEDTKLKEFIEKYGIGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
                           89******************999************************97 PP
2Myb_DNA-binding42.12e-1369111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +++eEd ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  GSMUA_Achr4P25260_001  69 GEFSEEEDRIICSLFTTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                            78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.438962IPR017930Myb domain
SuperFamilySSF466895.99E-2811109IPR009057Homeodomain-like
SMARTSM007171.0E-111364IPR001005SANT/Myb domain
PfamPF002492.5E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-241569IPR009057Homeodomain-like
CDDcd001677.91E-101662No hitNo description
PROSITE profilePS5129422.04663117IPR017930Myb domain
SMARTSM007173.6E-1267115IPR001005SANT/Myb domain
PfamPF002491.6E-1169111IPR001005SANT/Myb domain
CDDcd001677.82E-970113No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRTPCCEKA NVKRGPWSPE EDTKLKEFIE KYGIGGNWIS LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSEEEDRIIC SLFTTIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGI  120
TNPSQRKPRQ QKQHHQNHQQ YCLPSPSPPL QGRSHTTTTT TTTDGFPFTT ATSGLLEVPY  180
DQHQIKESSA MITLGNDQTC SSSDGSCSTK AGYVGGGDHM DIDGYLYGAT ELEYSSEEIN  240
QFLISILGCS NGGTNSNNLY LDYPTANAGR EELEDPLNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398927.10.0PREDICTED: transcription factor RAX2-like
TrEMBLM0SRY70.0M0SRY7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P25260_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-76myb domain protein 36