PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P24760_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 378aa    MW: 40871.2 Da    PI: 8.3559
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P24760_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.87.4e-19297331135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  GSMUA_Achr4P24760_001 297 CSHCGAQKTPQWRAGPLGAKTLCNACGVRFKSGRL 331
                            *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.5E-14291345IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-14293355No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14295329IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.438295327IPR000679Zinc finger, GATA-type
CDDcd002025.18E-13296338No hitNo description
PfamPF003201.6E-16297331IPR000679Zinc finger, GATA-type
PROSITE patternPS003440297322IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MFHKTLVPFS SSSSPAPSLS SPFFIPQPTS IPLPLGPLQL PSPVPSLVYF NCSQVEREVR  60
MEEALKHSMP GSSLYSGQQR LQQQQQNKVT VNEEWGWAAE RGNLLGEEFS VDDLLDLGDY  120
ADYYKEAEAA KEVVEEVTAT AEAPEAGNGE RADSNNSSPP STSSTLSFQS LQPRLSEISL  180
PAHDAEELEW VSLVIEGSSS EFSQCPGVAH TTSAPPPHGQ TGTPAVAAAH GASPKSPAVC  240
GFSKEVMVPM KAKRSKRCRS AAAWNTSISC LNQRPKKRGR KPKPPATAAS GSCERRCSHC  300
GAQKTPQWRA GPLGAKTLCN ACGVRFKSGR LLPEYRPACS PTFVNHIHSN SHRKVLEMRR  360
KKEAELLIFP AAPPVPSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398100.10.0PREDICTED: GATA transcription factor 3-like isoform X2
TrEMBLM0SRT70.0M0SRT7_MUSAM; GATA transcription factor
STRINGGSMUA_Achr4P24760_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.25e-39GATA transcription factor 5