PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P23690_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 368aa    MW: 40471.4 Da    PI: 8.5805
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P23690_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171966148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+ Ed +lv+ v+++G g+W+++ r+ g+ R++k+c++rw ++l
  GSMUA_Achr4P23690_001 19 KGPWTPAEDAILVEHVRRHGEGNWNAVQRHSGLARCGKSCRLRWANHL 66
                           79******************************************9986 PP

2Myb_DNA-binding50.74.3e-1672115146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +g++T++E++l++++++qlG++ W++ a+ ++ gRt++++k++w++
  GSMUA_Achr4P23690_001  72 KGSFTPDEELLILRLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 115
                            799*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-241469IPR009057Homeodomain-like
PROSITE profilePS5129416.9571466IPR017930Myb domain
SuperFamilySSF466891.24E-2916113IPR009057Homeodomain-like
SMARTSM007175.0E-141868IPR001005SANT/Myb domain
PfamPF002491.9E-151966IPR001005SANT/Myb domain
CDDcd001676.40E-122166No hitNo description
PROSITE patternPS0017503443IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129424.97567121IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2570120IPR009057Homeodomain-like
SMARTSM007171.2E-1571119IPR001005SANT/Myb domain
PfamPF002495.9E-1572115IPR001005SANT/Myb domain
CDDcd001672.11E-1174117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MKAEEGERGG KKAERGLKKG PWTPAEDAIL VEHVRRHGEG NWNAVQRHSG LARCGKSCRL  60
RWANHLRPNL KKGSFTPDEE LLILRLHAQL GNKWARMAAQ LPGRTDNEIK NYWNTRLKRR  120
QRAGLPIYPP ELQEAVGFDH QLKQQASTLL RTPPPLPPPP SAAEFSARLP SLRPAPLLDP  180
AIFRPSSGMT LPPLPQNLFS CHLGFGFPLS PASPPPTPTS LFQPQQQLGP GNYEVSRPQR  240
LPPVPWPTMA KMELPSCQLF PEPVGGRDGL TSSGLLEALL QDAHVPEDMK LGELLALPTV  300
GEQEAVWEHV FFGGDSSEAI KETSQGCSLG SATKLEGLDC DMGEFYRTNP PVSVPCVGSL  360
CIRTTNMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30171205107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1479624e-61AC147962.1 Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete sequence.
GenBankAP0149594e-61AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018680483.10.0PREDICTED: myb-related protein P-like isoform X2
TrEMBLM0SRI00.0M0SRI0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P23690_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-67myb domain protein 101