PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P23690_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 368aa MW: 40471.4 Da PI: 8.5805 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv+ v+++G g+W+++ r+ g+ R++k+c++rw ++l GSMUA_Achr4P23690_001 19 KGPWTPAEDAILVEHVRRHGEGNWNAVQRHSGLARCGKSCRLRWANHL 66 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4.3e-16 | 72 | 115 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E++l++++++qlG++ W++ a+ ++ gRt++++k++w++ GSMUA_Achr4P23690_001 72 KGSFTPDEELLILRLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 115 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-24 | 14 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.957 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-29 | 16 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-14 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 19 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.40E-12 | 21 | 66 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 34 | 43 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 24.975 | 67 | 121 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-25 | 70 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-15 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-15 | 72 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.11E-11 | 74 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MKAEEGERGG KKAERGLKKG PWTPAEDAIL VEHVRRHGEG NWNAVQRHSG LARCGKSCRL 60 RWANHLRPNL KKGSFTPDEE LLILRLHAQL GNKWARMAAQ LPGRTDNEIK NYWNTRLKRR 120 QRAGLPIYPP ELQEAVGFDH QLKQQASTLL RTPPPLPPPP SAAEFSARLP SLRPAPLLDP 180 AIFRPSSGMT LPPLPQNLFS CHLGFGFPLS PASPPPTPTS LFQPQQQLGP GNYEVSRPQR 240 LPPVPWPTMA KMELPSCQLF PEPVGGRDGL TSSGLLEALL QDAHVPEDMK LGELLALPTV 300 GEQEAVWEHV FFGGDSSEAI KETSQGCSLG SATKLEGLDC DMGEFYRTNP PVSVPCVGSL 360 CIRTTNMR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 17 | 120 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00287 | DAP | Transfer from AT2G32460 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147962 | 4e-61 | AC147962.1 Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 4e-61 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018680483.1 | 0.0 | PREDICTED: myb-related protein P-like isoform X2 | ||||
TrEMBL | M0SRI0 | 0.0 | M0SRI0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P23690_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7420 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 2e-67 | myb domain protein 101 |