PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P23030_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 250aa MW: 28758.3 Da PI: 8.0398 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 149.9 | 1.3e-46 | 18 | 146 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGfrF+Ptdee+v +yL++kv++k+l++ evike+diyk++PwdLp kv+++ e yfF++r +ky+++ r+nr+t sg+Wkatg d+ GSMUA_Achr4P23030_001 18 PGFRFRPTDEEIVGFYLRRKVDEKPLSV-EVIKEMDIYKYDPWDLP-KVRSTGCEEYFFCRRGRKYKNSIRPNRVTGSGFWKATGVDR 103 9***************************.99***************.677777899******************************** PP NAM 91 evlsk..kgelvglkktLvfy...kgrapkgektdWvmheyrl 128 +++++ +g +glkk+Lvfy + a kg+kt+W+mhe+rl GSMUA_Achr4P23030_001 104 PIYAAgnSGDCIGLKKSLVFYsrgRTAAAKGTKTEWMMHEFRL 146 ****8666667**********86656899************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-50 | 15 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.068 | 16 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-24 | 18 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MWREKGRVME DEDVVPLPGF RFRPTDEEIV GFYLRRKVDE KPLSVEVIKE MDIYKYDPWD 60 LPKVRSTGCE EYFFCRRGRK YKNSIRPNRV TGSGFWKATG VDRPIYAAGN SGDCIGLKKS 120 LVFYSRGRTA AAKGTKTEWM MHEFRLPCDS PCTQEAEVWT ICRVFKRSVS HRANPNSWKA 180 SDHKEQTPPE SSSESFNGNY FHGGQWNSTN QASVPLCSDT VQSPSMNEFF SGDDNWDELG 240 RIMNSMISNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-41 | 18 | 170 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-41 | 18 | 170 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-41 | 18 | 170 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-41 | 18 | 170 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-41 | 18 | 172 | 22 | 173 | NAC domain-containing protein 19 |
3swm_B | 4e-41 | 18 | 172 | 22 | 173 | NAC domain-containing protein 19 |
3swm_C | 4e-41 | 18 | 172 | 22 | 173 | NAC domain-containing protein 19 |
3swm_D | 4e-41 | 18 | 172 | 22 | 173 | NAC domain-containing protein 19 |
3swp_A | 4e-41 | 18 | 172 | 22 | 173 | NAC domain-containing protein 19 |
3swp_B | 4e-41 | 18 | 172 | 22 | 173 | NAC domain-containing protein 19 |
3swp_C | 4e-41 | 18 | 172 | 22 | 173 | NAC domain-containing protein 19 |
3swp_D | 4e-41 | 18 | 172 | 22 | 173 | NAC domain-containing protein 19 |
4dul_A | 3e-41 | 18 | 170 | 19 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-41 | 18 | 170 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009398319.2 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X2 | ||||
Swissprot | Q9SK55 | 5e-75 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | M0SRB4 | 0.0 | M0SRB4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P23030_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-77 | NAC domain containing protein 42 |