PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P21910_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 219aa    MW: 25145.7 Da    PI: 8.0851
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P21910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.8e-18552148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WTteEd++lv ++k++G  +W++ +r  g+ R++k+c++rw +yl
  GSMUA_Achr4P21910_001  5 KGPWTTEEDQILVAYIKRYGHANWRALPRQAGLLRCGKSCRLRWMNYL 52
                           79******************************99************97 PP
2Myb_DNA-binding51.62.2e-1658103148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+ T+eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  GSMUA_Achr4P21910_001  58 RGNLTKEEEETIIRLHERLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 103
                            7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.462152IPR017930Myb domain
SuperFamilySSF466892.21E-30199IPR009057Homeodomain-like
SMARTSM007171.2E-13454IPR001005SANT/Myb domain
PfamPF002492.0E-15552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-24659IPR009057Homeodomain-like
CDDcd001676.76E-10752No hitNo description
PROSITE profilePS5129425.04953107IPR017930Myb domain
SMARTSM007174.8E-1457105IPR001005SANT/Myb domain
PfamPF002493.8E-1558103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2560105IPR009057Homeodomain-like
CDDcd001672.75E-1062103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGLKKGPWTT EEDQILVAYI KRYGHANWRA LPRQAGLLRC GKSCRLRWMN YLRPDIKRGN  60
LTKEEEETII RLHERLGNRW SAIAARLPGR TDNEIKNVWH THLKKLAGPN MASKESQRKT  120
PDRSMVKKKK KIGDSTVGVK EESCPAEDLQ EIDERFWLET LSMDDSAASM DITSLEIPPP  180
PPPAVTDHFN LLTSSNGDDM DFWMEVFMRT GDLQELSQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-27310525126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398450.11e-145PREDICTED: myb-related protein Myb4
SwissprotQ7XBH42e-74MYB4_ORYSJ; Transcription factor MYB4
TrEMBLM0SR041e-162M0SR04_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P21910_0011e-163(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-70myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]