PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P21700_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 232aa MW: 26346.8 Da PI: 7.3034 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.9e-16 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +lv++v+ +G + W+t a++ g+ ++k+c++rw++yl GSMUA_Achr4P21700_001 20 RGAWSAEEDRKLVEYVTAHGDKKWRTLAAKAGLFPCGKSCRLRWLNYL 67 89******************************666***********97 PP | |||||||
2 | Myb_DNA-binding | 57.3 | 3.6e-18 | 73 | 118 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l GSMUA_Achr4P21700_001 73 RGNMSEEEEDLIIRLHNLLGNR-WALIAGRLP-GRTDNEIKNHWNTHL 118 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.862 | 15 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.37E-27 | 18 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-10 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-13 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-21 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.91E-8 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 26.618 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-17 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-17 | 73 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.10E-12 | 75 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 75 | 121 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MVKKRENEGK KKKSVMAWKR GAWSAEEDRK LVEYVTAHGD KKWRTLAAKA GLFPCGKSCR 60 LRWLNYLRPG IKRGNMSEEE EDLIIRLHNL LGNRWALIAG RLPGRTDNEI KNHWNTHLSK 120 RSLTIQDLNA KMNQKLESSS GVASPSPALA SDALPVLHLT ADGSELNVGQ PFDFTLNWNA 180 TVNEFEAEGY GFADHEELFR GGSSVDAHRH HLPLQLDELS EFIDCEEYYF LS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 20 | 124 | 7 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009398977.1 | 1e-170 | PREDICTED: transcription factor WER-like | ||||
Swissprot | Q9SEI0 | 2e-50 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | M0SQY3 | 1e-172 | M0SQY3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P21700_001 | 1e-172 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17778 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 2e-52 | MYB family protein |