PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P20150_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 269aa    MW: 29424 Da    PI: 9.6509
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P20150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.86.8e-201762147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + 
  GSMUA_Achr4P20150_001 17 KGPWSPEEDEALQKLVQRHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 62
                           79******************************.***********985 PP

2Myb_DNA-binding56.75.5e-1871113347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++T+eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
  GSMUA_Achr4P20150_001  71 PFTPEEDETIIRAHRRFGNK-WATIARLLS-GRTDNAVKNHWNST 113
                            89******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.9911267IPR017930Myb domain
SuperFamilySSF466891.12E-3214110IPR009057Homeodomain-like
SMARTSM007172.3E-171665IPR001005SANT/Myb domain
PfamPF002492.1E-191762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-271870IPR009057Homeodomain-like
CDDcd001676.80E-171961No hitNo description
SMARTSM007173.9E-1568116IPR001005SANT/Myb domain
PROSITE profilePS5129420.59769118IPR017930Myb domain
PfamPF002494.4E-1571113IPR001005SANT/Myb domain
CDDcd001679.52E-1371114No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2371117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAATVVGSRS KDVDRIKGPW SPEEDEALQK LVQRHGPRNW SLISKSIPGR SGKSCRLRWC  60
NQLSPQVEHR PFTPEEDETI IRAHRRFGNK WATIARLLSG RTDNAVKNHW NSTLKRRTSS  120
DGPAISSSGA GLCLSPGSPS ASELSDSSHH SLPMTSPVST ASHIYRPVPR TGGVNTEDPV  180
TSLSLSLPGS ETMDIPDHHH STGDDNGRHK QLDLAPAELL AVMQEMIRKE VRSYMTSLER  240
SGAACTESRP PSESVRNAGI KRIGVAKME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-41161183105C-Myb DNA-Binding Domain
1msf_C4e-41161183105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00632PBMTransfer from PK28565.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398678.11e-177PREDICTED: transcription factor MYB44-like
SwissprotO231604e-83MYB73_ARATH; Transcription factor MYB73
TrEMBLM0SQH80.0M0SQH8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P20150_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-78myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]