PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P19300_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | G2-like | ||||||||
Protein Properties | Length: 256aa MW: 28517 Da PI: 8.8259 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.7 | 2e-31 | 89 | 143 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHerFve+ ++LGG+ekAtPk il+lm+ gLt++hvkSHLQkYR+ GSMUA_Achr4P19300_001 89 KTRIRWTQDLHERFVECANRLGGAEKATPKGILKLMNSAGLTIYHVKSHLQKYRI 143 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.63 | 86 | 146 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-29 | 87 | 144 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.31E-16 | 87 | 144 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-22 | 89 | 144 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-8 | 93 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.7E-21 | 173 | 219 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MISVIFYVKI PSLIRGADRQ VGVPPVHLLS FMIPLYVSLP LLFCSVLLFV LVGCGPSSSS 60 TEKQNSQLQT EKQLPKALST APGTALSNKT RIRWTQDLHE RFVECANRLG GAEKATPKGI 120 LKLMNSAGLT IYHVKSHLQK YRIAKHMPER AEGKTLLLRA AANVAELDPK IGMQFTEALR 180 LQLDVQVRLH EQLEIQKNLQ LRIEAQSRKL QQMLEEQAKS NTSHVQTENM DVSSAGDSPA 240 ESFDDAQLLH QVSIED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-23 | 89 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-23 | 89 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-23 | 89 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-23 | 89 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-23 | 89 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-23 | 89 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-23 | 89 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-23 | 89 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009398775.1 | 1e-140 | PREDICTED: protein PHOSPHATE STARVATION RESPONSE 2-like | ||||
Swissprot | Q0WVU3 | 5e-59 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | M0SQ93 | 0.0 | M0SQ93_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P19300_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6933 | 37 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 2e-61 | G2-like family protein |