PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P18240_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 607aa    MW: 66624.7 Da    PI: 6.8578
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P18240_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.7e-2398199199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++v
  GSMUA_Achr4P18240_001  98 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIV 183
                            89****************************996555555..8999******************************************* PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   +++++ l+v+++r+
  GSMUA_Achr4P18240_001 184 FL--RTENGDLCVGIRRA 199
                            **..4588999****997 PP

2Auxin_resp120.21.6e-39223306183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                            aa+ a+++++FevvY+Prast+eF+vk+++v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dpvrWpnS+Wr+L+
  GSMUA_Achr4P18240_001 223 AATLAANGQPFEVVYYPRASTPEFCVKAASVKAAMRIQWCPGMRFKMAFETEDSSRISWfMGTISSVQIADPVRWPNSPWRLLQ 306
                            68899*****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-3791204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.23E-2894201IPR015300DNA-binding pseudobarrel domain
CDDcd100177.20E-2197198No hitNo description
PfamPF023621.6E-2198199IPR003340B3 DNA binding domain
SMARTSM010196.6E-2198200IPR003340B3 DNA binding domain
PROSITE profilePS5086312.99998200IPR003340B3 DNA binding domain
PfamPF065072.3E-34223306IPR010525Auxin response factor
PROSITE profilePS5174520.999521601IPR000270PB1 domain
SuperFamilySSF542776.67E-5524595No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MLTFSKSMKE SSMKQSDKCL DSQLWHACAG GMVQMPAVNS KVYYFPQGHT EHAQGLTDEV  60
FAKISLVPLR PNEPDFGEDD GLGLSINGVD VQEKPASFAK TLTQSDANNG GGFSVPRYCA  120
ETIFPRLDYS ADPPVQTVLA KDVHGEIWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD  180
SIVFLRTENG DLCVGIRRAK RGGIGGGPDI PSGWNPPDSV IEAATLAANG QPFEVVYYPR  240
ASTPEFCVKA ASVKAAMRIQ WCPGMRFKMA FETEDSSRIS WFMGTISSVQ IADPVRWPNS  300
PWRLLQVTWD EPDLLQNVNR VNPWLVELVS NMPAIHLAPF SPPRKKLRIP QHPDFPLEGQ  360
LSTPMFPGNP LGHCTSPLFC FPDSTPAGIQ GARHSQFGIS LSDLHHNKLQ SGLFHAGFHR  420
LNHTSSLSRI SAGVAVDSPA IDKNISCLLT IGNTSQSIKN PCNAKPQQLM LFGKPILTEE  480
QISLSNSGDM VSPGATGYSS PDGNLEKTTK FPEASDLGLE TGHCKVFMES DDVGRTLDLS  540
VFGSYEELYR RLADMFGIEK SEMMSHVIYK DAAGAVKLTG DEPFSDFMKT ARRLTILTDS  600
GSDNIGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-792032751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3902245e-31HQ390224.1 Triticum aestivum clone UCDTA00675 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396973.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLM0SPY70.0M0SPY7_MUSAM; Auxin response factor
STRINGGSMUA_Achr4P18240_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]