PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P18240_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ARF | ||||||||
Protein Properties | Length: 607aa MW: 66624.7 Da PI: 6.8578 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.4 | 2.7e-23 | 98 | 199 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++v GSMUA_Achr4P18240_001 98 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIV 183 89****************************996555555..8999******************************************* PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F +++++ l+v+++r+ GSMUA_Achr4P18240_001 184 FL--RTENGDLCVGIRRA 199 **..4588999****997 PP | |||||||
2 | Auxin_resp | 120.2 | 1.6e-39 | 223 | 306 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk+++v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dpvrWpnS+Wr+L+ GSMUA_Achr4P18240_001 223 AATLAANGQPFEVVYYPRASTPEFCVKAASVKAAMRIQWCPGMRFKMAFETEDSSRISWfMGTISSVQIADPVRWPNSPWRLLQ 306 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-37 | 91 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.23E-28 | 94 | 201 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.20E-21 | 97 | 198 | No hit | No description |
Pfam | PF02362 | 1.6E-21 | 98 | 199 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.6E-21 | 98 | 200 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.999 | 98 | 200 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-34 | 223 | 306 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 20.999 | 521 | 601 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 6.67E-5 | 524 | 595 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 607 aa Download sequence Send to blast |
MLTFSKSMKE SSMKQSDKCL DSQLWHACAG GMVQMPAVNS KVYYFPQGHT EHAQGLTDEV 60 FAKISLVPLR PNEPDFGEDD GLGLSINGVD VQEKPASFAK TLTQSDANNG GGFSVPRYCA 120 ETIFPRLDYS ADPPVQTVLA KDVHGEIWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD 180 SIVFLRTENG DLCVGIRRAK RGGIGGGPDI PSGWNPPDSV IEAATLAANG QPFEVVYYPR 240 ASTPEFCVKA ASVKAAMRIQ WCPGMRFKMA FETEDSSRIS WFMGTISSVQ IADPVRWPNS 300 PWRLLQVTWD EPDLLQNVNR VNPWLVELVS NMPAIHLAPF SPPRKKLRIP QHPDFPLEGQ 360 LSTPMFPGNP LGHCTSPLFC FPDSTPAGIQ GARHSQFGIS LSDLHHNKLQ SGLFHAGFHR 420 LNHTSSLSRI SAGVAVDSPA IDKNISCLLT IGNTSQSIKN PCNAKPQQLM LFGKPILTEE 480 QISLSNSGDM VSPGATGYSS PDGNLEKTTK FPEASDLGLE TGHCKVFMES DDVGRTLDLS 540 VFGSYEELYR RLADMFGIEK SEMMSHVIYK DAAGAVKLTG DEPFSDFMKT ARRLTILTDS 600 GSDNIGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 7e-79 | 20 | 327 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ390224 | 5e-31 | HQ390224.1 Triticum aestivum clone UCDTA00675 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009396973.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | M0SPY7 | 0.0 | M0SPY7_MUSAM; Auxin response factor | ||||
STRING | GSMUA_Achr4P18240_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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