PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P17960_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

SRS

Protein Properties

Length: 319aa MW: 33593.4 Da PI: 8.2261

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P17960_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	225.2	1.3e-69	99	244	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C thvkstWvpaakrrerq+qlaaa++ + +++++ skr+re ++ +a+ t+ GSMUA_Achr4P17960_001 99 GGGMSCQDCGNQAKKDCVHMRCRTCCKSRGFQCPTHVKSTWVPAAKRRERQHQLAAAAALQ--QQSQQPSKRPREIATRLPTAI--TT 182 5789************************************************9986555..558899999999844444443..44 PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +ss+ +e+ s+P+evss+avfrcvrvs +dd+e+e+aYqta+sigGhvf+GiLydqG+++ GSMUA_Achr4P17960_001 183 TSSG--GGGMEAVSFPTEVSSPAVFRCVRVSPMDDAEDEFAYQTAISIGGHVFRGILYDQGPDS 244 4444..4579999***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.3E-67	101	243	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.1E-28	103	145	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.7E-25	195	242	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MAGFSLGGGS RQGGEEGIPP ESLFLYGSGS SGVGGGGSRN EEITYTRGFE LWQQHQQQIQ 60 RQQQHHLYTS TPGLLSFSDE PLQAGGAIGR TISMRGSGGG GMSCQDCGNQ AKKDCVHMRC 120 RTCCKSRGFQ CPTHVKSTWV PAAKRRERQH QLAAAAALQQ QSQQPSKRPR EIATRLPTAI 180 TTTSSGGGGM EAVSFPTEVS SPAVFRCVRV SPMDDAEDEF AYQTAISIGG HVFRGILYDQ 240 GPDSQYPSTP RALHGESSSS TAAAAITTAA AIATSLPAAP TSSTTPAAST GLLDPSALYT 300 TPLSAFMAGT QFFPHHPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009396996.1	1e-172	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Refseq	XP_009396997.1	1e-172	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	1e-70	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	M0SPV9	0.0	M0SPV9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P17960_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	4e-56	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]