PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P16840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 421aa    MW: 46259 Da    PI: 8.43
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P16840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32137193360
                            -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                            DgynWrKYGqK+vkgse prsYY+Ct++ Cpvkkkvers  ++++ ei+Y+geHnh+k
  GSMUA_Achr4P16840_001 137 DGYNWRKYGQKQVKGSESPRSYYKCTHPACPVKKKVERSL-EGQIAEIVYNGEHNHPK 193
                            9***************************************.***************85 PP
2WRKY94.38.6e-30337393359
                            -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            Dg++WrKYGqK vkg+++prsYYrCts++C+v+k ver+++d  + ++tYeg+Hnhe
  GSMUA_Achr4P16840_001 337 DGFRWRKYGQKLVKGNTYPRSYYRCTSTKCNVRKYVERASDDSGYYVTTYEGKHNHE 393
                            9*******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-28132194IPR003657WRKY domain
SuperFamilySSF1182901.44E-24134194IPR003657WRKY domain
SMARTSM007744.2E-35135193IPR003657WRKY domain
PROSITE profilePS5081123.365137194IPR003657WRKY domain
PfamPF031064.7E-25137192IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-30327395IPR003657WRKY domain
SuperFamilySSF1182902.09E-27328395IPR003657WRKY domain
PROSITE profilePS5081130.974330395IPR003657WRKY domain
SMARTSM007743.6E-34335394IPR003657WRKY domain
PfamPF031066.7E-24337393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MSSPSSSFAI KPKAMKFDPT SNDRAAKAVS PADDVSESAA SRLSEKLCMT TLQADSPLNI  60
LYKPTAKVVS RATAALLANL ENPDAIRQKP TRNYQQPAVV VEQAKPDYVA GRRQSCSRSD  120
LKNQQQPTGC GDRPSYDGYN WRKYGQKQVK GSESPRSYYK CTHPACPVKK KVERSLEGQI  180
AEIVYNGEHN HPKPLPPRKL SSGSQGQAFF SEEAGREAGS NPSWGSSVSE VKVSATSVDE  240
QNEPSLAGIP TYAGRVHFSH ESFIATTYDS SDNNTDASTQ IGKVGSRSRA ASMASDKLDC  300
KRRKNEDPYS GANSVTEDGA EADPITLTAM ECDIPGDGFR WRKYGQKLVK GNTYPRSYYR  360
CTSTKCNVRK YVERASDDSG YYVTTYEGKH NHEMPERKIN FGASDPDTEE GFNGSSDHNF  420
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-261373951077Probable WRKY transcription factor 4
2lex_A7e-261373951077Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396858.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_009396859.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_018679985.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_018679986.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_018679987.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_018679988.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_018679989.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_018679990.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_018679991.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
TrEMBLM0SPJ80.0M0SPJ8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P16840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1847669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.21e-73WRKY family protein