PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P15640_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 349aa MW: 38394.8 Da PI: 7.9272 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 79.7 | 3e-25 | 128 | 188 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 ldDgy+WrKYG K++ gs+++rsYYrC + +C ++k+v+rs+edp++++++Y+g+H++ GSMUA_Achr4P15640_001 128 LDDGYSWRKYGNKNILGSKHSRSYYRCRDRntkSCFATKQVQRSDEDPQAFDVIYQGTHTC 188 59*************************8776779*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.1E-25 | 117 | 188 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21 | 123 | 186 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-22 | 127 | 188 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-32 | 128 | 190 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-24 | 129 | 188 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MENSTGCKHR SLLLAELARA QHLALQLVAH RDQHSPIESF KSLASNIVSS IDKLIHIAGS 60 STSEAKQQLA FPNTVPEDPL RSANKDASAG NFDSVFHRNC NNLSKNRKTL PKKKIQVKVG 120 SGGVAAALDD GYSWRKYGNK NILGSKHSRS YYRCRDRNTK SCFATKQVQR SDEDPQAFDV 180 IYQGTHTCCR GLPVPTTASI SAQERRQNQP DRRLQNDQRV QQPNKDLLMD FQTGMDLDTH 240 ESSLSFRLGS VTAKATLPES INGYSSQPSK PDNCCFGRSP SASELIDISG SPSQLCHSEA 300 GLEPLASDSY VSDSLTPPNS AVDADIRLLE FDTQFGEFSV SCSNLFYTM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-16 | 124 | 188 | 4 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009396561.1 | 0.0 | PREDICTED: probable WRKY transcription factor 41 | ||||
TrEMBL | M0SP79 | 0.0 | M0SP79_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P15640_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 2e-39 | WRKY family protein |