PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P15540_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 286aa    MW: 30148.1 Da    PI: 4.8397
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P15540_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.5e-2982139359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers+ dp+v+++tY  +Hnh+
  GSMUA_Achr4P15540_001  82 DSWTWRKYGQKPIKGSPFPRGYYRCSSSkGCPARKQVERSRVDPTVIVVTYAFDHNHT 139
                            99************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-3076141IPR003657WRKY domain
SuperFamilySSF1182909.02E-2579141IPR003657WRKY domain
SMARTSM007741.5E-3480140IPR003657WRKY domain
PfamPF031063.0E-2582138IPR003657WRKY domain
PROSITE profilePS5081130.88282141IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MNGSCSNELD ACETEEVEIA SEINDARPGS PGSGDDSKPV HSLGASTSSP YPKRSRRGVQ  60
KRVVTVPISD SKGAGEGAPP PDSWTWRKYG QKPIKGSPFP RGYYRCSSSK GCPARKQVER  120
SRVDPTVIVV TYAFDHNHTS PLPKNHHHKH AAAAAQPVEE QPLTPQLNQS GTPDSAERDE  180
KFSDLITEEE SAFTVHAGGC FPWFADVCSV HPTSPSAADS DELLYGSVLF AGAATGAALP  240
EELEEAAGGG GGGDDDSLFA GLGELPEYTV VLRWGLASAS WVGTAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-2061141679Disease resistance protein RRS1
5w3x_D9e-2061141679Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9737059e-31EU973705.1 Zea mays clone 407083 WRKY14 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396549.10.0PREDICTED: probable WRKY transcription factor 65
TrEMBLM0SP690.0M0SP69_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P15540_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.13e-48WRKY DNA-binding protein 69