PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P15540_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 286aa MW: 30148.1 Da PI: 4.8397 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.6 | 1.5e-29 | 82 | 139 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers+ dp+v+++tY +Hnh+ GSMUA_Achr4P15540_001 82 DSWTWRKYGQKPIKGSPFPRGYYRCSSSkGCPARKQVERSRVDPTVIVVTYAFDHNHT 139 99************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.1E-30 | 76 | 141 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.02E-25 | 79 | 141 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-34 | 80 | 140 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-25 | 82 | 138 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.882 | 82 | 141 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MNGSCSNELD ACETEEVEIA SEINDARPGS PGSGDDSKPV HSLGASTSSP YPKRSRRGVQ 60 KRVVTVPISD SKGAGEGAPP PDSWTWRKYG QKPIKGSPFP RGYYRCSSSK GCPARKQVER 120 SRVDPTVIVV TYAFDHNHTS PLPKNHHHKH AAAAAQPVEE QPLTPQLNQS GTPDSAERDE 180 KFSDLITEEE SAFTVHAGGC FPWFADVCSV HPTSPSAADS DELLYGSVLF AGAATGAALP 240 EELEEAAGGG GGGDDDSLFA GLGELPEYTV VLRWGLASAS WVGTAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 9e-20 | 61 | 141 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 9e-20 | 61 | 141 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU973705 | 9e-31 | EU973705.1 Zea mays clone 407083 WRKY14 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009396549.1 | 0.0 | PREDICTED: probable WRKY transcription factor 65 | ||||
TrEMBL | M0SP69 | 0.0 | M0SP69_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P15540_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10947 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.1 | 3e-48 | WRKY DNA-binding protein 69 |