PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P14990_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 332aa MW: 36325.4 Da PI: 6.6237 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.6 | 2.3e-32 | 193 | 251 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers ++p++v++tYeg+H he GSMUA_Achr4P14990_001 193 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQNPRIVITTYEGKHAHE 251 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.9E-34 | 178 | 253 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-28 | 186 | 253 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.317 | 188 | 253 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-37 | 193 | 252 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-25 | 194 | 250 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MSGDQERSHF SFPSHDELSS LVSWKPAGGA TDSAGDPRGF GPRAVPPPVS LTDVLRGSMM 60 DYGALARAFD LPCSAPSDVL APGGMASSRE LMADVGNAGN SMTPSSGCGG SATPMTPNSS 120 TSWSSTEAAG EEDAERCKKD EPKQEEEVEK QRVKVEEEGG DTSEKVNKSK KKGEKRQRDP 180 RFAFVTESEV DHLDDGYRWR KYGQKAVKNS PYPRSYYRCT TQKCPVKKRV ERSYQNPRIV 240 ITTYEGKHAH ECPATVRGST HLLPPPSAMS TSFCQNLVMQ QMNQLNNDNS LQANINPNVY 300 LANLPPSLQQ LQLPDYGLLQ DIIPSFIHGG QP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-28 | 186 | 254 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-28 | 186 | 254 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009396501.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 isoform X2 | ||||
TrEMBL | M0SP14 | 0.0 | M0SP14_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P14990_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 7e-45 | WRKY DNA-binding protein 71 |