PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P14990_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 332aa    MW: 36325.4 Da    PI: 6.6237
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P14990_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.3e-32193251159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers ++p++v++tYeg+H he
  GSMUA_Achr4P14990_001 193 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQNPRIVITTYEGKHAHE 251
                            59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-34178253IPR003657WRKY domain
SuperFamilySSF1182901.44E-28186253IPR003657WRKY domain
PROSITE profilePS5081132.317188253IPR003657WRKY domain
SMARTSM007742.5E-37193252IPR003657WRKY domain
PfamPF031061.9E-25194250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSGDQERSHF SFPSHDELSS LVSWKPAGGA TDSAGDPRGF GPRAVPPPVS LTDVLRGSMM  60
DYGALARAFD LPCSAPSDVL APGGMASSRE LMADVGNAGN SMTPSSGCGG SATPMTPNSS  120
TSWSSTEAAG EEDAERCKKD EPKQEEEVEK QRVKVEEEGG DTSEKVNKSK KKGEKRQRDP  180
RFAFVTESEV DHLDDGYRWR KYGQKAVKNS PYPRSYYRCT TQKCPVKKRV ERSYQNPRIV  240
ITTYEGKHAH ECPATVRGST HLLPPPSAMS TSFCQNLVMQ QMNQLNNDNS LQANINPNVY  300
LANLPPSLQQ LQLPDYGLLQ DIIPSFIHGG QP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-281862541078Probable WRKY transcription factor 4
2lex_A2e-281862541078Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396501.10.0PREDICTED: probable WRKY transcription factor 71 isoform X2
TrEMBLM0SP140.0M0SP14_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P14990_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.17e-45WRKY DNA-binding protein 71