PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P14930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 80aa    MW: 9136.3 Da    PI: 9.7547
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P14930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.5e-10952344
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                           +WT+ E + + +a + +  +   +W++Iar +g g+t+ ++k ++
  GSMUA_Achr4P14930_001  9 SWTAKENKMFEKALAVYDRDtpdRWHKIARAIG-GKTADEVKRYY 52
                           7*****************99*************.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.575560IPR017884SANT domain
SMARTSM007171.4E-8658IPR001005SANT/Myb domain
PfamPF002491.5E-7952IPR001005SANT/Myb domain
SuperFamilySSF466897.4E-14963IPR009057Homeodomain-like
CDDcd001671.95E-8952No hitNo description
Gene3DG3DSA:1.10.10.609.9E-8962IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MASGSMSSSW TAKENKMFEK ALAVYDRDTP DRWHKIARAI GGKTADEVKR YYDLLVEDVR  60
RIEAGQMPYA NYRSSNGRGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-2910771178RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396486.17e-53PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1733e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLM0SP082e-52M0SP08_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P14930_0014e-53(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-34RAD-like 6