PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P14920_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 79aa MW: 9167.16 Da PI: 5.5877 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.1 | 5.4e-10 | 6 | 53 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 + +W++eE + + a +++ + +W+ +ar +g gR+++++k ++ GSMUA_Achr4P14920_001 6 KSSWSEEENKSFELALALYDEEtpeRWHNVARAVGRGRSAEEVKRHYE 53 578*****************99************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.4E-9 | 5 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-8 | 6 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-6 | 6 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.888 | 6 | 56 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.09E-12 | 6 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.34E-6 | 8 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MASDPKSSWS EEENKSFELA LALYDEETPE RWHNVARAVG RGRSAEEVKR HYELLVKDIH 60 LIDSTKEPIF HYPPTRSQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-22 | 1 | 75 | 1 | 76 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009396744.1 | 8e-53 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 1e-23 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | M0SP07 | 2e-51 | M0SP07_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P14920_001 | 3e-52 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 3e-24 | RAD-like 6 |