PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P14910_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 330aa    MW: 36015.5 Da    PI: 8.2919
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P14910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.21.5e-3153106458
            ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                            +rY+eCl+NhAa++Ggh+vDGCgEfmps g   ta+al+CaACgCHR+FHRrev+
  GSMUA_Achr4P14910_001  53 TRYRECLRNHAAAIGGHVVDGCGEFMPS-GYPDTAEALNCAACGCHRSFHRREVD 106
                            79*************************9.7778*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.4E-2953105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-1854107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.6E-2854105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.52255104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.8E-29166234IPR009057Homeodomain-like
SuperFamilySSF466893.17E-18168232IPR009057Homeodomain-like
TIGRFAMsTIGR015658.2E-28173229IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDPSPQSLTK NTGQSFVSNS STGAAGAGVP SKTEPAAITS KNSTTTTTAD ISTRYRECLR  60
NHAAAIGGHV VDGCGEFMPS GYPDTAEALN CAACGCHRSF HRREVDGGTN AAGSYYHATD  120
HLPVLLPPPH PLAHPHHHHH HQKPPSGSGG TTTESSSEER INAAAPTAAT MPRKRFRTKF  180
TAEQKNKMLA FAERIGWTIQ RQDSEMIEQF CAEIGVRRQV LKVWMHNNKH TIIRKQPPPQ  240
HQQEPPVQQQ HQQPPESRLP YSSCSRKESD IASLESSGGT DKSSTSITCF LFLVPPLAFL  300
FICCLLLGDL NNLSVIFTSN SITLSLYLLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-271742311875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396485.11e-139PREDICTED: zinc-finger homeodomain protein 6-like
SwissprotB8AX538e-62ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLM0SP060.0M0SP06_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P14910_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.18e-54homeobox protein 22