PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P14270_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 452aa MW: 48354.8 Da PI: 8.2113 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.8 | 8.2e-32 | 229 | 285 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkve+s d++v+ei+Y+g+Hnh+ GSMUA_Achr4P14270_001 229 HDGYNWRKYGQKVVKGSEYPRSYYKCTHPKCPVKKKVECSV-DGQVTEIIYKGQHNHQ 285 7****************************************.***************8 PP | |||||||
2 | WRKY | 105.7 | 2.3e-33 | 361 | 419 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++ers +dpk+v++ Yeg+Hnh+ GSMUA_Achr4P14270_001 361 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCNVRKHIERSPTDPKAVITSYEGKHNHD 419 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.1E-28 | 216 | 287 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.02E-25 | 226 | 287 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-34 | 228 | 286 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-23 | 230 | 285 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.768 | 230 | 287 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.1E-36 | 347 | 421 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-29 | 353 | 421 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.574 | 356 | 421 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-38 | 361 | 420 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-25 | 362 | 419 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MNLMAENGGG GGGGGAGGGG GGVVRGGKAA VPGPGTLPRP TITLPPRSSF ESLFHGGAGG 60 ASEVSPGPLT LVSSFFAEES ESDCCSFTQL LVGAINSPSG GGLVRLGQSR PPGLAISQPQ 120 MFTVPLGLSP AGLLDSPAFL SSGLGNFAMS HQEALAQVTA QAAESQFRMQ SEAEFPSSFL 180 AATTSSSSQQ PILETPTIKP TYAAEESADG SQSDRRLESN TAIVNNNAHD GYNWRKYGQK 240 VVKGSEYPRS YYKCTHPKCP VKKKVECSVD GQVTEIIYKG QHNHQRPTPN KRAKEANKSD 300 HGTPEQLSGS SDGEEGAEIR TDEGDDDDER DPKRRNMAAS SHRTLNEPRI IVQTTSEVDL 360 LDDGYRWRKY GQKVVKGNPN PRSYYKCTYA GCNVRKHIER SPTDPKAVIT SYEGKHNHDI 420 PAARNSSHNT VSRPLSPRFR LTIRIIVISI CI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-39 | 230 | 422 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-39 | 230 | 422 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009396423.2 | 0.0 | PREDICTED: probable WRKY transcription factor 4 | ||||
Swissprot | Q9XI90 | 1e-132 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | M0SNU2 | 0.0 | M0SNU2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P14270_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1345 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-118 | WRKY DNA-binding protein 4 |
Publications ? help Back to Top | |||
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