PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P14270_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 452aa    MW: 48354.8 Da    PI: 8.2113
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P14270_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.2e-32229285259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkve+s  d++v+ei+Y+g+Hnh+
  GSMUA_Achr4P14270_001 229 HDGYNWRKYGQKVVKGSEYPRSYYKCTHPKCPVKKKVECSV-DGQVTEIIYKGQHNHQ 285
                            7****************************************.***************8 PP

2WRKY105.72.3e-33361419159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++ers +dpk+v++ Yeg+Hnh+
  GSMUA_Achr4P14270_001 361 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCNVRKHIERSPTDPKAVITSYEGKHNHD 419
                            59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-28216287IPR003657WRKY domain
SuperFamilySSF1182909.02E-25226287IPR003657WRKY domain
SMARTSM007742.6E-34228286IPR003657WRKY domain
PfamPF031061.0E-23230285IPR003657WRKY domain
PROSITE profilePS5081122.768230287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-36347421IPR003657WRKY domain
SuperFamilySSF1182908.11E-29353421IPR003657WRKY domain
PROSITE profilePS5081137.574356421IPR003657WRKY domain
SMARTSM007745.1E-38361420IPR003657WRKY domain
PfamPF031062.5E-25362419IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MNLMAENGGG GGGGGAGGGG GGVVRGGKAA VPGPGTLPRP TITLPPRSSF ESLFHGGAGG  60
ASEVSPGPLT LVSSFFAEES ESDCCSFTQL LVGAINSPSG GGLVRLGQSR PPGLAISQPQ  120
MFTVPLGLSP AGLLDSPAFL SSGLGNFAMS HQEALAQVTA QAAESQFRMQ SEAEFPSSFL  180
AATTSSSSQQ PILETPTIKP TYAAEESADG SQSDRRLESN TAIVNNNAHD GYNWRKYGQK  240
VVKGSEYPRS YYKCTHPKCP VKKKVECSVD GQVTEIIYKG QHNHQRPTPN KRAKEANKSD  300
HGTPEQLSGS SDGEEGAEIR TDEGDDDDER DPKRRNMAAS SHRTLNEPRI IVQTTSEVDL  360
LDDGYRWRKY GQKVVKGNPN PRSYYKCTYA GCNVRKHIER SPTDPKAVIT SYEGKHNHDI  420
PAARNSSHNT VSRPLSPRFR LTIRIIVISI CI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-39230422878Probable WRKY transcription factor 4
2lex_A5e-39230422878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396423.20.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-132WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLM0SNU20.0M0SNU2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P14270_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-118WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]