PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P13970_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 513aa    MW: 56178.5 Da    PI: 5.7406
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P13970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.7e-32158215260
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                            +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kk++ers+ d++++ei+Y+g+H+h+k
  GSMUA_Achr4P13970_001 158 EDGYNWRKYGQKHVKGSEYPRSYYKCTHPHCQMKKQIERSQ-DGQITEIIYKGRHDHPK 215
                            8****************************************.***************85 PP
2WRKY107.28.4e-34334392159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  GSMUA_Achr4P13970_001 334 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNSGCPVRKHVERASHDPKAVITTYEGKHNHD 392
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-28154216IPR003657WRKY domain
SuperFamilySSF1182901.96E-24157216IPR003657WRKY domain
SMARTSM007742.4E-33157215IPR003657WRKY domain
PROSITE profilePS5081123.124158216IPR003657WRKY domain
PfamPF031067.9E-24158214IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-38319394IPR003657WRKY domain
SuperFamilySSF1182907.45E-30326394IPR003657WRKY domain
PROSITE profilePS5081138.962329394IPR003657WRKY domain
SMARTSM007749.6E-40334393IPR003657WRKY domain
PfamPF031061.0E-26335392IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MSPARLPIAR APCLTIPPGF SPSALLESPV LLTNMKAEPS PTTGTFNMCS IMDKTVCIEV  60
LSSTRDTSDV NAYDGGNSGD FEFKPHGRAS YNPDLSSLKP SGSVGLIQEE NMPSMQIPSQ  120
SQGSGELQQA KSLEQSTQML QSDPSEPTPS SILERSAEDG YNWRKYGQKH VKGSEYPRSY  180
YKCTHPHCQM KKQIERSQDG QITEIIYKGR HDHPKPQPNR RSAIGAVLSS QEEEKPAEFS  240
SLMGAEDKSA NVPFHITHQV DPNGTTELSP ALVSENDVEI GGGQSNNCNE VVGDGDPESK  300
RRKMENANIE SASIGKMNRE PRVVVQTVSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC  360
TNSGCPVRKH VERASHDPKA VITTYEGKHN HDVPAAKTIS HEMITTGESS LKESDTVSLD  420
LGVGIIPCQS NISNEQQQPL EIEQLQHYQP QSMDCGKLVI QTTSLSSLNG SSHTTRIYES  480
GEVEGEGFTF KATPIDPSSN LYYTTAGNLV MGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-38158395878Probable WRKY transcription factor 4
2lex_A4e-38158395878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396398.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X5
SwissprotQ6VWJ61e-179WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLM0SNR20.0M0SNR2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P13970_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-128WRKY family protein