PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P13280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 305aa    MW: 35042.2 Da    PI: 5.8614
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P13280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-091458148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W++eEde+l+d + + G g  +   + +   R++k+c++rw +yl
  GSMUA_Achr4P13280_001 14 KGLWSPEEDEKLYDHIIRCGVG-YTFLLSGLE--RCGKSCRLRWINYL 58
                           678*******************.***999998..************97 PP
2Myb_DNA-binding49.31.1e-1564108147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg+++++E++ ++++++ +G++ W+ Ia+ ++ gRt++++k++w++ 
  GSMUA_Achr4P13280_001  64 RGNFSQQEEDTIIRLHEIMGNR-WSQIASQLP-GRTDNEIKNYWNSC 108
                            89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-16661IPR009057Homeodomain-like
PROSITE profilePS5129410.628958IPR017930Myb domain
SuperFamilySSF466893.13E-2411105IPR009057Homeodomain-like
SMARTSM007175.4E-71360IPR001005SANT/Myb domain
PfamPF002492.8E-81458IPR001005SANT/Myb domain
PROSITE profilePS5129425.29159113IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-2762113IPR009057Homeodomain-like
SMARTSM007175.2E-1663111IPR001005SANT/Myb domain
PfamPF002491.8E-1464108IPR001005SANT/Myb domain
CDDcd001672.41E-1066106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRHSCCLKQ KIRKGLWSPE EDEKLYDHII RCGVGYTFLL SGLERCGKSC RLRWINYLRP  60
DLKRGNFSQQ EEDTIIRLHE IMGNRWSQIA SQLPGRTDNE IKNYWNSCLK KKLRQRGIDP  120
SSHKPLSEIA AQEEGTRTHC SNTGAAFEQL QLHPVFDTFP LIEIQTCLDS VETNVSIYGQ  180
FHQTFEPVGQ DECLVNLELC DHGSALDNIG HGDSSINSSN WNCNIGSEMK SVFGDEDLNW  240
VSQSKVETPA HMQMNEEKTH EHKFNHWQEK NTYPIPVRSL SHDLSETCFS VSRDAMESEF  300
NVDFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141137108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108114LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396318.10.0PREDICTED: myb-related protein Hv33-like isoform X2
SwissprotP200278e-70MYB3_HORVU; Myb-related protein Hv33
TrEMBLM0SNJ30.0M0SNJ3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P13280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.19e-68myb domain protein 86