PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P13170_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NF-YC | ||||||||
Protein Properties | Length: 146aa MW: 16947.3 Da PI: 4.7197 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45.1 | 2.1e-14 | 35 | 72 | 1 | 35 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkaded 35 ql++fw++q ie++tdf+nh+lPlarikki+kaded GSMUA_Achr4P13170_001 35 QLQMFWADQyreIEQTTDFRNHSLPLARIKKIMKADED 72 89*****99999*************************9 PP | |||||||
2 | NF-YC | 38 | 3.5e-12 | 71 | 103 | 69 | 101 |
NF-YC 69 nkrrtlkksdiaaavtrtdifdflvdivprdel 101 +rrtl+k+diaaa++rtd+fdfl+divpr+e GSMUA_Achr4P13170_001 71 EDRRTLQKNDIAAAISRTDVFDFLIDIVPREEG 103 579***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.79E-12 | 27 | 94 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.6E-8 | 49 | 72 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 9.2E-9 | 73 | 100 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MDQQPGHPVP PMIGVPPGVP YQAYQNLYHQ QQQQQLQMFW ADQYREIEQT TDFRNHSLPL 60 ARIKKIMKAD EDRRTLQKND IAAAISRTDV FDFLIDIVPR EEGKEDVAHA LGGPPVDPLS 120 YYYEFEIPFG MYVLAGYFFL LNLQIC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 78 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009396308.1 | 1e-73 | PREDICTED: nuclear transcription factor Y subunit C-6-like | ||||
Swissprot | Q8LCG7 | 9e-32 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | M0SNI2 | 1e-104 | M0SNI2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P13170_001 | 1e-105 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 7e-33 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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