PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P12070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 127aa    MW: 13837.4 Da    PI: 9.5198
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P12070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.46.7e-221465256
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                           +y+GVr+++ +g+++AeIrdps  g  +r++lg+fgtaeeAa+a+++a+ +++g+
  GSMUA_Achr4P12070_001 14 KYRGVRRRP-WGKYAAEIRDPSRHG--ARVWLGTFGTAEEAARAYDKAAFQMRGA 65
                           8********.**********96544..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.84E-291373No hitNo description
SMARTSM003801.7E-361478IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-321473IPR001471AP2/ERF domain
PfamPF008474.3E-161464IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-241474IPR016177DNA-binding domain
PROSITE profilePS5103224.6581472IPR001471AP2/ERF domain
PRINTSPR003671.2E-111526IPR001471AP2/ERF domain
PRINTSPR003671.2E-113854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MGGGGERKEG DEAKYRGVRR RPWGKYAAEI RDPSRHGARV WLGTFGTAEE AARAYDKAAF  60
QMRGALAVLN FPDEVVHYRG GATSSSSSSS ATGRPRRSAT TGKQVIELEC LDDKVLDELL  120
QSSEGFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-3311151114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396176.12e-88PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_009396177.12e-88PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_018680085.12e-88PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLM0SN724e-87M0SN72_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P12070_0017e-88(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-28ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]