PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P11960_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 28393.3 Da PI: 8.2179 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.4 | 6.9e-13 | 17 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqkyl 48 +g W+++Ed++l d++ ++G +W++++++ g ++R +k+c++rw +yl GSMUA_Achr4P11960_001 17 KGLWSPDEDQKLRDYILMHGVSCWSAVPAKAGelflhlahgLRRNRKSCRLRWINYL 73 678****************************************************97 PP | |||||||
2 | Myb_DNA-binding | 40.3 | 7.1e-13 | 79 | 133 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E+e ++++ + G++ W++Ia +++ gRt++++k++w++yl GSMUA_Achr4P11960_001 79 RGKLSLQEEETILKLQSKIGNNkmtclmlaMWSLIALHLP-GRTDNEVKNYWNSYL 133 788999**********************************.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.603 | 12 | 77 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.48E-21 | 14 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-10 | 16 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-12 | 17 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-19 | 18 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.30E-7 | 20 | 73 | No hit | No description |
PROSITE profile | PS51294 | 13.07 | 78 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 6.7E-7 | 78 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-11 | 79 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-20 | 81 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.87E-8 | 83 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MRMEYKSCKQ PEVNYRKGLW SPDEDQKLRD YILMHGVSCW SAVPAKAGEL FLHLAHGLRR 60 NRKSCRLRWI NYLRPGLKRG KLSLQEEETI LKLQSKIGNN KMTCLMLAMW SLIALHLPGR 120 TDNEVKNYWN SYLKQKTSKP QESDTHSLKH SALNLSIPRL TKLEEQNDHI LSCLEDSEQS 180 VTPSTGDGSP KGMAADHLPK VLFADWFSFE QDNWESLFNL DDVRSSQVDD AIVLNGFKFS 240 NTYNDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-16 | 11 | 137 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009396692.2 | 1e-164 | PREDICTED: transcription factor LAF1-like | ||||
TrEMBL | M0SN61 | 0.0 | M0SN61_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P11960_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12296 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 3e-47 | myb domain protein 19 |