PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P11810_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 490aa MW: 53886.3 Da PI: 9.9182

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P11810_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	50	72	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H GSMUA_Achr4P11810_001 50 FICEVCNKGFQREQNLQLHRRGH 72 89*******************88 PP
2	zf-C2H2	12.8	0.00036	126	148	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ GSMUA_Achr4P11810_001 126 WKCDKCSKRYAVQSDWKAHSKTC 148 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.3E-6	49	72	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.11E-7	49	72	No hit	No description
Pfam	PF12171	2.3E-5	50	72	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0052	50	72	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.99	50	72	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	52	72	IPR007087	Zinc finger, C2H2
SMART	SM00355	150	91	121	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.0E-5	114	147	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.11E-7	121	146	No hit	No description
SMART	SM00355	140	126	146	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MATASSHHHR RRRRQLLLPR KRGTSREIQA NPDAEVVALS PKTLLATNRF ICEVCNKGFQ 60 REQNLQLHRR GHNLPWKLKQ KNPKEVRRRV YICPEPTCVH YEPSRALGDL TGIKKHYCRK 120 HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAQE 180 SARIPAGINT IGGSHFYGNT GIHLGLPQLN SQLSSLQEQT HCGNDSAAPF NHVTLPSFRP 240 PQSATPFFLG SGSSQDIHED TQLLQSKPFH GLMQLQDHLQ HNTNASSSSS AAAATDLFNL 300 SIFSNRNHLI SNHMDANMFD QSVTTESVPP HMSATALLQK AAQMGATSSC SSASSLLRGI 360 GSLYSSNSKN AGFQASATQV ENESHFQDLM NSLTNGNTST FNGGNHQKTG FSGFISGIGN 420 MNESKLQRNL SASGLGTSDS LTRDFLGVGS MMRRGGITQR EQHLGIDISS LDPELKSGSS 480 TRSFVGGSLQ

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MATASSHHHR RRRRQLLLPR KRGTSREIQA NPDAEVVALS PKTLLATNRF ICEVCNKGFQ  60
REQNLQLHRR GHNLPWKLKQ KNPKEVRRRV YICPEPTCVH YEPSRALGDL TGIKKHYCRK  120
HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAQE  180
SARIPAGINT IGGSHFYGNT GIHLGLPQLN SQLSSLQEQT HCGNDSAAPF NHVTLPSFRP  240
PQSATPFFLG SGSSQDIHED TQLLQSKPFH GLMQLQDHLQ HNTNASSSSS AAAATDLFNL  300
SIFSNRNHLI SNHMDANMFD QSVTTESVPP HMSATALLQK AAQMGATSSC SSASSLLRGI  360
GSLYSSNSKN AGFQASATQV ENESHFQDLM NSLTNGNTST FNGGNHQKTG FSGFISGIGN  420
MNESKLQRNL SASGLGTSDS LTRDFLGVGS MMRRGGITQR EQHLGIDISS LDPELKSGSS  480
TRSFVGGSLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-35	122	184	3	65	Zinc finger protein JACKDAW
5b3h_F	5e-35	122	184	3	65	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00256	DAP	Transfer from AT2G02080	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009396147.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q8GYC1	1e-115	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	M0SN46	0.0	M0SN46_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P11810_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1733	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-110	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]