PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P10060_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 263aa    MW: 30117.1 Da    PI: 6.856
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P10060_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.32.8e-34211132103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++++d+ ++ ++sw  ++ +fvv+ + efa+++Lp+yFkhsnf+SFvRQLn+YgF+k+  ++         weF++++F++g
  GSMUA_Achr4P10060_001  21 FLTKTYQLVDDPCTDPIVSWGGDEGTFVVWRPPEFARDLLPNYFKHSNFSSFVRQLNTYGFRKIAADR---------WEFANEYFRRG 99 
                            9********************999*****************************************999.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            +k+ll++i+r+k++
  GSMUA_Achr4P10060_001 100 EKHLLSEIHRRKTS 113
                            ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3612104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-5517110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.58E-3318110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-182144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.4E-3021110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-185971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MESSGDMVVS MDSAKPVPAP FLTKTYQLVD DPCTDPIVSW GGDEGTFVVW RPPEFARDLL  60
PNYFKHSNFS SFVRQLNTYG FRKIAADRWE FANEYFRRGE KHLLSEIHRR KTSQVPQFFH  120
CHPQHAWIEP PSAVPGGDVD FLSALSEDNQ RLRKKNSLLL SELTRMKKLY NDIIYFIQHH  180
VAPPVAPEPR HARLVELPPC DQNQPLPATA EPDSGVKLFG FPIHGKKRLN RETICLAESN  240
PEEQKPLEKS LEREGSVQDV RES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-221111311123Heat shock factor protein 1
5d5u_B9e-2211128131Heat shock factor protein 1
5d5v_B9e-2211128131Heat shock factor protein 1
5d5v_D9e-2211128131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395938.10.0PREDICTED: heat stress transcription factor B-4b-like
SwissprotQ7XHZ01e-85HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLM0SMM30.0M0SMM3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P10060_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-80heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]