PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P08880_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 165aa MW: 18801.7 Da PI: 7.6988 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.5 | 3.6e-30 | 87 | 145 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K++k+s++pr+YYrC++ gC+vkk ver++ed ++v +tYeg+Hnh+ GSMUA_Achr4P08880_001 87 LDDGYKWRKYGRKKMKNSPYPRNYYRCSTVGCNVKKTVEREREDSRFVLTTYEGTHNHH 145 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-32 | 74 | 147 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 80 | 147 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.181 | 82 | 147 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-33 | 87 | 146 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-23 | 88 | 145 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MSSSSSFLQS SWGNDQPDNI IAAIDDFLAF DEDPQTAHAV LSPASQQQSP EFFQDHDKNE 60 NKSKGSLRGS SSGSRVAFRT KSELEVLDDG YKWRKYGRKK MKNSPYPRNY YRCSTVGCNV 120 KKTVERERED SRFVLTTYEG THNHHAPLPA TTLHQRLEGL PHTEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-27 | 70 | 147 | 1 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-27 | 70 | 147 | 1 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018680509.1 | 1e-122 | PREDICTED: probable WRKY transcription factor 50 | ||||
TrEMBL | M0SMA5 | 1e-121 | M0SMA5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P08880_001 | 1e-122 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 1e-35 | WRKY DNA-binding protein 50 |