PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P08360_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 258aa MW: 27620.3 Da PI: 5.426 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93 | 2.2e-29 | 77 | 134 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp v+++tY+ eHnh+ GSMUA_Achr4P08360_001 77 DSWTWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPAVIVVTYSFEHNHT 134 99************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.5E-30 | 72 | 136 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-25 | 74 | 136 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-34 | 75 | 135 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.215 | 77 | 136 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 77 | 133 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MTGSCSNEPG ASEADEVGDA SEANDGRPVS AGSTDDSQPV RSSAPCPKRC RRAVQKRVVT 60 MPISEAKGGG EGAPPPDSWT WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR KQVERSRVDP 120 AVIVVTYSFE HNHTWPVPRN HHHKHAAARP EEQLGQSGTP DSAERDEKFS DPIAEEESAL 180 TVDARGGFPW FADVCFTPSA SPSELEEQAA GGGGGAEEDS LFAGLGELPE YSVVLRRGLV 240 PASWLGTTGK LIREEGNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-18 | 56 | 133 | 6 | 76 | Disease resistance protein RRS1 |
5w3x_D | 3e-18 | 56 | 133 | 6 | 76 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009395741.1 | 1e-166 | PREDICTED: probable WRKY transcription factor 65 | ||||
TrEMBL | M0SM53 | 0.0 | M0SM53_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P08360_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7088 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.1 | 2e-42 | WRKY DNA-binding protein 69 |