PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P07920_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 487aa    MW: 52762.5 Da    PI: 8.2533
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P07920_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.3e-31181238259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers ++ ++v++tYeg+H+h+
  GSMUA_Achr4P07920_001 181 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQNSTIVITTYEGRHTHR 238
                            8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-33165240IPR003657WRKY domain
SuperFamilySSF1182907.32E-28173240IPR003657WRKY domain
PROSITE profilePS5081130.71175240IPR003657WRKY domain
SMARTSM007743.6E-36180239IPR003657WRKY domain
PfamPF031068.5E-25181238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MSGYHEREHF RSLFHDELAA LFSQRPTDGA ACISGGPSGS DTGAIFPAVT FTDVPLGSMM  60
DNDALPRVFG LSCSAPLDAL GPGGRTGSPE LMVDVGNGSG SLTPTFGCGG RVTTVTTNSS  120
TSSLSAEAAG EEDADRCKKE EQQEEEGDTS KKVKKPNKQG ERRQREPRFA FVTESEVDHL  180
EDGYRWRKYG QKAVKNSPYP RSYYRCTTQK CPVKKRVERS YQNSTIVITT YEGRHTHRCP  240
ATVRGSTLLL PPPLMSTSFF QDLVMQQAHQ LNSTANQMLP LQQLEFSHYG LLQDMTNPSP  300
DVGTLIFPYP PLRTPRDGRP VDVVRISGDV VELGMGRGGA SAGGAARYMC GKDAELGVWL  360
PLTGPQGGGA LRPHAPLPRQ RPPHRSFPPS SYQRIRKNVL HLVWASASSD SHGSAVRGIL  420
SNKFGHFGGP NTGPPGRLLV TELLTSPCAC YAISHMSPEM TCSDACRSLC TKTRIPPLQF  480
GAPAEPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-241732411078Probable WRKY transcription factor 4
2lex_A2e-241732411078Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396626.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLM0SM090.0M0SM09_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P07920_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.16e-48WRKY DNA-binding protein 28