PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P07860_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 111aa    MW: 12582.4 Da    PI: 8.4815
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P07860_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.5e-10547444
                           S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
        Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                           WT+ E + + +a + + ++   +W+ Iar +g g+t++++k ++
  GSMUA_Achr4P07860_001  5 WTAKENKTFERALAVYDKDtpdRWHNIARAVG-GKTAEEVKRHY 47
                           ********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129312.48155IPR017884SANT domain
SMARTSM007174.6E-8153IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-13458IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-6557IPR009057Homeodomain-like
CDDcd001671.47E-8547No hitNo description
PfamPF002492.0E-7547IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MASGWTAKEN KTFERALAVY DKDTPDRWHN IARAVGGKTA EEVKRHYDLL VEDIRRIEAG  60
QMPYVHYKSP GSRGIHIYIL PSNCSFEISV LSHCTLLAPP CLIWPNSSKN I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-305711177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018679820.11e-49PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLM0SM033e-78M0SM03_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P07860_0015e-79(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.28e-34RAD-like 6