PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P07850_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 331aa    MW: 35114.3 Da    PI: 9.9637
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P07850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.41.1e-30132185357
            ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                            ++rY eCl+NhAa++Ggh+vDGCgEfmps ge  t++a++CaACgCHR+FHRr+ 
  GSMUA_Achr4P07850_001 132 STRYGECLRNHAAAIGGHVVDGCGEFMPS-GEPDTPEAFNCAACGCHRSFHRRDG 185
                            579*************************9.7778*******************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.5E-28133184IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-16134186IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.2E-27134184IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.329135184IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.02E-19238305IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-29238305IPR009057Homeodomain-like
TIGRFAMsTIGR015653.6E-27244300IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEFRGPSEIR IPSSPPGYNT SLIRGGSAFS KPILPSASLV SPRGGGGVGA DGGGAGGAAN  60
GNIFGNARAP PPTLEHTTTT MDHTPQSLTK NAGQDSIPNS SPGAVAAGVS SHTKPAATTK  120
TSSTIAATAT ISTRYGECLR NHAAAIGGHV VDGCGEFMPS GEPDTPEAFN CAACGCHRSF  180
HRRDGDGGTN AAGPYYHSTT RLPVLLPPPH PHHHQKQFHL SGFCSPSAAE RINAGAPTPA  240
TMPRKRFRTK FTAEQKDKML AFAERAGWRI QRQDSAMVEQ FCAEIGVRRQ VLKVWMHNNK  300
HTVTRKRQQQ EELAVQQQQS QLPQPGSPLL H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-282453021875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395689.10.0PREDICTED: zinc-finger homeodomain protein 5-like
SwissprotQ9SB611e-57ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLM0SM020.0M0SM02_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P07850_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-54homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]