PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P07850_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 331aa MW: 35114.3 Da PI: 9.9637 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.4 | 1.1e-30 | 132 | 185 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++rY eCl+NhAa++Ggh+vDGCgEfmps ge t++a++CaACgCHR+FHRr+ GSMUA_Achr4P07850_001 132 STRYGECLRNHAAAIGGHVVDGCGEFMPS-GEPDTPEAFNCAACGCHRSFHRRDG 185 579*************************9.7778*******************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.5E-28 | 133 | 184 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-16 | 134 | 186 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.2E-27 | 134 | 184 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.329 | 135 | 184 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.02E-19 | 238 | 305 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-29 | 238 | 305 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.6E-27 | 244 | 300 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MEFRGPSEIR IPSSPPGYNT SLIRGGSAFS KPILPSASLV SPRGGGGVGA DGGGAGGAAN 60 GNIFGNARAP PPTLEHTTTT MDHTPQSLTK NAGQDSIPNS SPGAVAAGVS SHTKPAATTK 120 TSSTIAATAT ISTRYGECLR NHAAAIGGHV VDGCGEFMPS GEPDTPEAFN CAACGCHRSF 180 HRRDGDGGTN AAGPYYHSTT RLPVLLPPPH PHHHQKQFHL SGFCSPSAAE RINAGAPTPA 240 TMPRKRFRTK FTAEQKDKML AFAERAGWRI QRQDSAMVEQ FCAEIGVRRQ VLKVWMHNNK 300 HTVTRKRQQQ EELAVQQQQS QLPQPGSPLL H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-28 | 245 | 302 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009395689.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
Swissprot | Q9SB61 | 1e-57 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | M0SM02 | 0.0 | M0SM02_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P07850_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-54 | homeobox protein 22 |
Publications ? help Back to Top | |||
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