PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P07230_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 470aa    MW: 50917.6 Da    PI: 8.2118
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P07230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.3e-32218274259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +Dgy+WrKYGqK+vkgs++prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  GSMUA_Achr4P07230_001 218 QDGYSWRKYGQKVVKGSNYPRSYYKCTHPKCPVKKKVERSV-DGQVTEIIYKGQHNHQ 274
                            8****************************************.***************8 PP
2WRKY102.91.8e-32370428159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++ers +dpk v++ Yeg+Hnh+
  GSMUA_Achr4P07230_001 370 LDDGYRWRKYGQKTVKGNPHPRSYYKCTYAGCRVRKHIERSPTDPKSVITSYEGKHNHD 428
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-28205276IPR003657WRKY domain
SuperFamilySSF1182902.88E-25216276IPR003657WRKY domain
SMARTSM007746.1E-35217275IPR003657WRKY domain
PfamPF031069.0E-25218274IPR003657WRKY domain
PROSITE profilePS5081123.525219276IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-36356430IPR003657WRKY domain
SuperFamilySSF1182909.68E-29362430IPR003657WRKY domain
PROSITE profilePS5081137.126365430IPR003657WRKY domain
SMARTSM007741.1E-36370429IPR003657WRKY domain
PfamPF031061.9E-25371428IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAENGSCDSS CGVVVVPEAG AGVPPRPTVS LPPRPSLESL FQGGGSGWGA WEASPGPLTL  60
VSSFFAEDSE SECRSFTQLL AGAMNSPSGS GFVRSGQNRP PSLAISQPQV FAVPPGLSPA  120
SLLDFPAFFS PGQGNFAMSH QKALAQVTAQ AAESPFRLLN QTQLPSPSLA STATTSSQQP  180
IQEIPTLKPS YIAVESAEGS QSDKKSQPHT TIVDKSAQDG YSWRKYGQKV VKGSNYPRSY  240
YKCTHPKCPV KKKVERSVDG QVTEIIYKGQ HNHQRPTPNK RTKVDSNLPC GLDETNGDHG  300
NLEPGFLESN YGTLEQVSGS SDSEEVAAIR IGEGDHNEHD AKRRNIAASS QRTLTEPRII  360
VQTTSEVDLL DDGYRWRKYG QKTVKGNPHP RSYYKCTYAG CRVRKHIERS PTDPKSVITS  420
YEGKHNHDVP AARNSSHSRV TTVSLTSADI KAYDQTPVAL LQLKEEHQVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37219431878Probable WRKY transcription factor 4
2lex_A1e-37219431878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396613.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-136WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLM0SLU00.0M0SLU0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P07230_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-126WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]