PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P07150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 2005aa    MW: 226226 Da    PI: 8.3568
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P07150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.47.6e-12328771128
                    NAM  71 gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            g  + +at+sgyW+ t  d ++++ +++++g k+tL f kg+ p g +t W+mhey++
  GSMUA_Achr4P07150_001  32 GGCEIKATRSGYWRPTD-DVKIYT-GTSTIGRKTTLEFCKGKVPFGDRTGWMMHEYQA 87 
                            5566789*******996.588999.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.311110IPR003441NAC domain
SuperFamilySSF1019411.7E-1527110IPR003441NAC domain
PfamPF023658.5E-63786IPR003441NAC domain
PfamPF027362.6E-9356392IPR004009Myosin, N-terminal, SH3-like
SuperFamilySSF525404.37E-2853831129IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0024204031079IPR001609Myosin head, motor domain
PROSITE profilePS51456270.0494081078IPR001609Myosin head, motor domain
PfamPF000637.0E-2544101066IPR001609Myosin head, motor domain
CDDcd0138404221066No hitNo description
PRINTSPR001932.4E-60438457IPR001609Myosin head, motor domain
Gene3DG3DSA:3.40.50.3001.7E-4494532IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR001932.4E-60495520IPR001609Myosin head, motor domain
PRINTSPR001932.4E-60542569IPR001609Myosin head, motor domain
PRINTSPR001932.4E-60775803IPR001609Myosin head, motor domain
PRINTSPR001932.4E-60828856IPR001609Myosin head, motor domain
SMARTSM000152710801102IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.03510811108IPR000048IQ motif, EF-hand binding site
PfamPF006120.07810831101IPR000048IQ motif, EF-hand binding site
SMARTSM000157.511031125IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.92511041133IPR000048IQ motif, EF-hand binding site
SMARTSM000150.06311281150IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.8411291156IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.66E-1411301226IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0211311149IPR000048IQ motif, EF-hand binding site
SMARTSM000156611511173IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.72311521181IPR000048IQ motif, EF-hand binding site
SMARTSM000154.411761198IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.88811771204IPR000048IQ motif, EF-hand binding site
PfamPF006120.01511781197IPR000048IQ motif, EF-hand binding site
SMARTSM000151.211991221IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.63812001229IPR000048IQ motif, EF-hand binding site
CDDcd15475015861971No hitNo description
PROSITE profilePS5112658.07216351948IPR002710Dilute domain
PfamPF018436.9E-2518231927IPR002710Dilute domain
SMARTSM011321.7E-4318231930IPR002710Dilute domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016459Cellular Componentmyosin complex
GO:0003677Molecular FunctionDNA binding
GO:0003774Molecular Functionmotor activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 2005 aa     Download sequence    Send to blast
MSSLAGALAF ASAFRYIDAR SSGPQGPRSP EGGCEIKATR SGYWRPTDDV KIYTGTSTIG  60
RKTTLEFCKG KVPFGDRTGW MMHEYQAEQH KLNGYIYSKD SSSLFRIFLQ TDRSRSQGEL  120
NYSASAGASG GEYVEQLLLS LLEQEEINLC LTVSANSSQT VAEMDQAQSA LSSRRPDEPV  180
PENFCANMYG NCDFAKGEYL ELNDFNSPET SSASSGNSSR LSVNSDEYFD PDALIRDIEN  240
DHGLGVEEEY TECRYSISVP VKSSQVVIRP PPSGSIKRNG NLAIYENNNC GTGHLLDRNG  300
LTIQPGHSSS TDKIQQKGKA STTSRPLGSH ANEINDSSQR LRASGGNGKN SIHNIGSHVW  360
VEDPTSSWID GQVTKITGEN AEVQASNGKT VVTSLSKIYP KDMEAPPGGV DDMTKLSYLH  420
EPGLLQNLST RYQLNEIYTY TGNILIAINP FQRLPHLYDS HMMIQYKGAR LGELSPHVFA  480
VADVAYRAMI NEEKSNSILV SGESGAGKTE TTKMLMRYLA YLGGRAATEG RTVEQQVLES  540
NPVLEAFGNA KTVRNNNSSR FGKFVEIQFD RQGRISGAAI RTYLLERSRV CQVSDPERNY  600
HCFYLLCAAP TEVVEKYKLS KPNSFHYLNQ SNCYELVGVS DAHDYLATRR AMDIVGISAQ  660
EQDAIFRVVA AILHLGNIDF AKGQDIDSSV LKDDKSKFHL KMTAELLMCD SAALEDALCK  720
RVMITPEEVI KRPLDPRAAT ISRDGLAKTI YSRLFDWIVD KINVSIGQDP NSKSLIGVLD  780
IYGFESFKTN SFEQFCINFT NEKLQQHFNQ HVFKMEQEEY TKEEIDWSYI EFVDNQDVLD  840
LIEKKPGGII ALLDEACMFP KSTHETFAQK LYQTFKTHKR FIKPKLSRTD FSISHYAGEV  900
LYQSDQFLDK NKDYVVAEHQ DLLSASKCSF VSGLFPPLPE ETSKTSKFSS IGSRFKQQLQ  960
ALMETLNSTE PHYIRCVKPN NLLKPAIFEN VNVMQQLRCG GVLEAIRISC AGYPTRRIFY  1020
EFLHRFGVLA PEVLEGNYDE KIACRKILEK TGLAGFQIGK SKVFLRAGQM AELDARRAEV  1080
LNSAAKTIQN QIRTHILRKQ FIALRKATIY VQSLWRRRLA FKLYEGMRRE NAAIKVQKNL  1140
RRYKAKKAYT RLRLSVLVLQ AGFRFLAARN EFRFRKQTKA ATVIQAKWRC YRAYSYHKKL  1200
KRASLVSQCR WRGRVARREL RKLKLTTQNG LVCSPILRWT DMYLPVHFGP SIFFKHGFKV  1260
FLHVFLSTHS SSFHYLYPCS TWALSASYLL NCLWSLINLS YLIHMDLICL IQAARETGAL  1320
KEAKDKLEKT VEELTWRLQL EKRLRTDLEE AKGQEITKLQ SSLQAMQSKV DETTAMLVKE  1380
REAAKKAIED APPVIEENTV LVQDTEKIDS LTDEVENLKA SLQSEKQRAD DAENRFNEAQ  1440
TTSEERQRKL HESEGKLHQL QESLHRSISD ISFFFLKNKL VLLQECHIQF EPSSSELSRE  1500
PNTVGHLLEE KLANLESENK VLRQQAVSMA PNKLLSGRSK STLQRSSENG LVINSETRTI  1560
ADPLSASFNM RENSEVDDKP QKSLNEKQQE NQDLLIRCIA QDLGFAGSRP VAACITYKCL  1620
LQWRSFEVER TSVFDRIIQT IGHAIETQDN NEVLAYWLSN ASTLLLLLQR TLKASGAAGM  1680
APQRRRSSSA TLFGRMTQSF RGTPQGVNLS FVNGSLTGGV DKLRQVEAKY PALLFKQQLT  1740
AYVEKIYGMI RDNLKKEISP LLGLCIQAPR TSRASLVKGS SRSPGNAPAQ QALIAHWQGI  1800
VKSLDSFLNT LKANHVPPFL VRKVFTQIFS FINVQLFNSL LLRRECCSFS NGEYVKAGLA  1860
ELEHWCYKAT DEYAGSAWDE LKHIRQAIGF LVIHQKPKKT LDEISHDLCP VLSVQQLYRI  1920
STMYWDDKYG THSVSPEVIS NMRVLMTEDS NNPVSNSFLL DDDSSIPFSV DDISKSMEPI  1980
DISDIEPPPL IRENSGFMFL LPRSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2dfs_A0.0357122511911Myosin-5A
2dfs_M0.0357122511911Myosin-5A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMyosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables. Involved in trafficking of Golgi stacks, mitochondria and peroxisomes. {ECO:0000269|PubMed:18503043, ECO:0000269|PubMed:19369591, ECO:0000269|PubMed:21914656}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395618.10.0PREDICTED: myosin-11-like isoform X1
SwissprotF4HWY60.0MYO11_ARATH; Myosin-11
TrEMBLM0SLT20.0M0SLT2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P07150_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-11NAC domain containing protein 57
Publications ? help Back to Top
  1. Hodge T,Cope MJ
    A myosin family tree.
    J. Cell. Sci., 2000. 113 Pt 19: p. 3353-4
    [PMID:10984423]
  2. Reddy AS,Day IS
    Analysis of the myosins encoded in the recently completed Arabidopsis thaliana genome sequence.
    Genome Biol., 2001. 2(7): p. RESEARCH0024
    [PMID:11516337]
  3. Sparkes IA,Teanby NA,Hawes C
    Truncated myosin XI tail fusions inhibit peroxisome, Golgi, and mitochondrial movement in tobacco leaf epidermal cells: a genetic tool for the next generation.
    J. Exp. Bot., 2008. 59(9): p. 2499-512
    [PMID:18503043]
  4. Avisar D, et al.
    A comparative study of the involvement of 17 Arabidopsis myosin family members on the motility of Golgi and other organelles.
    Plant Physiol., 2009. 150(2): p. 700-9
    [PMID:19369591]
  5. Peremyslov VV, et al.
    Expression, splicing, and evolution of the myosin gene family in plants.
    Plant Physiol., 2011. 155(3): p. 1191-204
    [PMID:21233331]
  6. Avisar D,Abu-Abied M,Belausov E,Sadot E
    Myosin XIK is a major player in cytoplasm dynamics and is regulated by two amino acids in its tail.
    J. Exp. Bot., 2012. 63(1): p. 241-9
    [PMID:21914656]
  7. Madison SL, et al.
    Class XI Myosins Move Specific Organelles in Pollen Tubes and Are Required for Normal Fertility and Pollen Tube Growth in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 1946-60
    [PMID:26358416]
  8. Kinkema M,Wang H,Schiefelbein J
    Molecular analysis of the myosin gene family in Arabidopsis thaliana.
    Plant Mol. Biol., 1994. 26(4): p. 1139-53
    [PMID:7811972]