PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P06840_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 27809.2 Da PI: 7.1494 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.8 | 4.3e-16 | 100 | 150 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +ykGVr+++ +g+W+AeIrdp +r r +lg++ tae Aa+ + aa++++e e GSMUA_Achr4P06840_001 100 RYKGVRQRR-WGKWAAEIRDP----IRgVRLWLGTYATAEAAAEVYRAAARRIEEE 150 69****998.**********7....246************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.0E-10 | 100 | 150 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.15E-13 | 100 | 128 | No hit | No description |
SuperFamily | SSF54171 | 3.27E-15 | 100 | 148 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.0E-20 | 100 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-21 | 100 | 152 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 100 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 101 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MKKSQGLSSF RPNSRKHLNG LIGSGKAARK VRIFFADPDA TDTSCSEDEE DKFGTESKRR 60 KRVLYEIPLS PAAKTLEIQR VSQHRAPKSL TSSTSAASGR YKGVRQRRWG KWAAEIRDPI 120 RGVRLWLGTY ATAEAAAEVY RAAARRIEEE KRSLLHHRHG PSNDSAGSVS SSCMSAPAGV 180 PPSPSSVLDI SLAAKPKGRP AAELLEELSM PEMEFGLDEE PFLVGELGED AIGLDDLPLS 240 EHQFDGDDFS FLDS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ866814 | 2e-65 | DQ866814.2 Musa formosana copper/zinc superoxide dismutase (CSD1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009395578.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF119-like | ||||
Refseq | XP_009395579.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF119-like | ||||
TrEMBL | M0SLQ1 | 0.0 | M0SLQ1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P06840_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5020 | 37 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 1e-18 | ERF family protein |