PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P06410_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 306aa    MW: 35101.9 Da    PI: 4.921
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P06410_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.7e-091459148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g W++eEde+l++ + ++G g t  +     g+ R++k+c++rw +yl
  GSMUA_Achr4P06410_001 14 KGLWSPEEDEKLYNHIIRYGVGyTYFL---LAGLQRCGKSCRLRWINYL 59
                           678*******************65555...555679***********97 PP
2Myb_DNA-binding50.16.4e-1665109147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg+++++E++l++ +++ +G++ W+ Ia+ ++ gRt++++k++w++ 
  GSMUA_Achr4P06410_001  65 RGNFSQQEEDLIISLHEIMGNR-WSQIASQLP-GRTDNEIKNYWNSC 109
                            89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-17662IPR009057Homeodomain-like
PROSITE profilePS512949.094959IPR017930Myb domain
SuperFamilySSF466894.3E-2511106IPR009057Homeodomain-like
SMARTSM007172.9E-41361IPR001005SANT/Myb domain
PfamPF002491.8E-71459IPR001005SANT/Myb domain
PROSITE profilePS5129425.66260114IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-2763114IPR009057Homeodomain-like
SMARTSM007174.0E-1664112IPR001005SANT/Myb domain
PfamPF002491.3E-1465109IPR001005SANT/Myb domain
CDDcd001671.41E-1067107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRHSCCLEQ KIRKGLWSPE EDEKLYNHII RYGVGYTYFL LAGLQRCGKS CRLRWINYLR  60
PDLKRGNFSQ QEEDLIISLH EIMGNRWSQI ASQLPGRTDN EIKNYWNSCL KKKLRQRGID  120
PSTHKPLCET ETEAQEASRT HLEQLPLQPV FDPFPLIETE TCLDSVENNV NIYNQFHQSF  180
ESSLAQTECY ANSGLREYSS VLDVYGDSSS NSSNWNCNTG AEMKDVVGDE ALNWVAQSEG  240
EAPPHVHMNG GEAHEHKFSP WQEKTNAESS EDYSTYSMRF LSCDVAETCF DIHRGALASE  300
FNVDFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27141147108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395536.10.0PREDICTED: myb-related protein Hv33-like
SwissprotP200274e-73MYB3_HORVU; Myb-related protein Hv33
TrEMBLM0SLK80.0M0SLK8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P06410_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.14e-72myb domain protein 86