PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P05720_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 346aa    MW: 38500.1 Da    PI: 9.6074
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P05720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.17.9e-4155132178
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            +CqvegC+ dls akeyhr+h+vCe+hsk p+v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+++
  GSMUA_Achr4P05720_001  55 CCQVEGCNIDLSGAKEYHRKHRVCETHSKFPKVIVAGQERRFCQQCSRFHDLSEFDQKKRSCRRRLSDHNARRRKPRP 132
                            6**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.4E-3349117IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.41153130IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.32E-3954135IPR004333Transcription factor, SBP-box
PfamPF031102.1E-3256129IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDWNANASLL WDWDNHAPFG GNYKLSAAAA AAGGGGASSG SELARVSYQS AHSTCCQVEG  60
CNIDLSGAKE YHRKHRVCET HSKFPKVIVA GQERRFCQQC SRFHDLSEFD QKKRSCRRRL  120
SDHNARRRKP RPNIISFNST TFSPSVYNDK YQMNMLWNKS PFGHMKPVAT TTSEASQKFK  180
LAQMRGSWVK SSKESSMYGQ LHMPDTQLPN GFTALYHDVD KPLPLKGTAA EVLNQGSEAS  240
AGASNLDRAP DLRRALSLLS TSSWGSPDPR GNGQTPFIIM DAKHASSAQP TVPVANPSNH  300
WIYGEPVSQQ AQPLLFSMHR NGNQTQEFQL PKAPYRDTFF DPTQIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-27561291184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111128KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395453.10.0PREDICTED: squamosa promoter-binding-like protein 12
TrEMBLM0SLD90.0M0SLD9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P05720_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-45squamosa promoter binding protein-like 2