PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P05410_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 290aa    MW: 33657 Da    PI: 8.5285
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P05410_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.1e-141764148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W+++Ed++l d + q+G  +W+ ++++ g++R +k+c++rw +yl
  GSMUA_Achr4P05410_001 17 KGLWSPDEDQKLRDSILQHGVSCWSEVPAKAGLRRNGKSCRLRWINYL 64
                           678*******************************************97 PP
2Myb_DNA-binding50.25.7e-1670151148
                            TSSS-HHHHHHHHHHHHHTTTT...................................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...................................tWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++++eE+e +v++  +lG++                                   +W+ Ia  ++ gRt++++k++w++y+
  GSMUA_Achr4P05410_001  70 RGNFSPEEEETIVKLQSKLGNKwkyyiktcsiqvwhayiilyfiaqkiddtyalfcyRWSQIAMQLP-GRTDNEVKNHWNSYM 151
                            89*****************************************************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.7581268IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-191467IPR009057Homeodomain-like
SMARTSM007173.4E-111666IPR001005SANT/Myb domain
PfamPF002496.1E-121764IPR001005SANT/Myb domain
SuperFamilySSF466895.53E-211994IPR009057Homeodomain-like
CDDcd001673.33E-82064No hitNo description
Gene3DG3DSA:1.10.10.601.7E-106893IPR009057Homeodomain-like
PROSITE profilePS5129410.69969155IPR017930Myb domain
SMARTSM007172.2E-1069153IPR001005SANT/Myb domain
CDDcd001675.14E-672151No hitNo description
SuperFamilySSF466894.52E-9119157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-12126157IPR009057Homeodomain-like
PfamPF002491.6E-6127150IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRTEFKNCKK PEVDYRKGLW SPDEDQKLRD SILQHGVSCW SEVPAKAGLR RNGKSCRLRW  60
INYLRPGLKR GNFSPEEEET IVKLQSKLGN KWKYYIKTCS IQVWHAYIIL YFIAQKIDDT  120
YALFCYRWSQ IAMQLPGRTD NEVKNHWNSY MKKKITKPQE LHTSSSASSA LNLTIQRLTM  180
HKEENDHGVP SAARGYTEAL EACLKNYDQS VSQNIGGVQN RTAADHFPKV LFADFLSFEQ  240
ANWDSLFNLD DAINNQWHCN NFYTASQVDA QYGNNVICFF ESYQLLSPLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-171715558159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-171715558159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395418.11e-169PREDICTED: transcription factor LAF1-like isoform X1
TrEMBLM0SLA80.0M0SLA8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P05410_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122962735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-46myb domain protein 18