PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P04510_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 375aa    MW: 42383.6 Da    PI: 7.0515
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P04510_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.98.5e-32154207255
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GSMUA_Achr4P04510_001 154 PRMRWTSALHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRS 207
                            8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-15151208IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28152208IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23154207IPR006447Myb domain, plants
PfamPF002497.4E-7155206IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MELFSSQPDL SLQISPPDMT PASALMEKAE SNTSEVSLAA RSTAVSTTTS NTTLLLHPLP  60
HHHHHHLHFH HHHHHHPLLH QGYHQDLSLL RPIRGIPVYQ NPPTSPLMPP YQQQQLLCDS  120
SPSTEFNHFA TTQGLSRSRY LPSRFPIKRS MRGPRMRWTS ALHARFVHAV ELLGGHERAT  180
PKSVLELMDV KDLTLAHVKS HLQMYRSVKT TDRPTNPSAV QSDGFENRSF GEVSDDNLVE  240
VHNLQNSESS THNGRPDAHH GINQWGHSSS WGSFSDDLVS DSTTNGSMES FKEMPSERFE  300
MYRDLNSPCL SGTTSQSRLN LEITLEFLEE ASCTSMNGIR RYISIIILLV FSLYEGKDPL  360
FSICLIYRLF TNKSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395313.10.0PREDICTED: probable transcription factor KAN2
TrEMBLM0SL180.0M0SL18_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P04510_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.15e-46G2-like family protein