PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P04500_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HSF

Protein Properties

Length: 439aa MW: 49074.7 Da PI: 4.7592

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P04500_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	118.2	4.7e-37	31	123	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+ye+++d++++ ++sw + +nsfvv++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g GSMUA_Achr4P04500_001 31 FLSKTYEMVDDPATDAIVSWGSANNSFVVWNTTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDQ---------WEFANEGFLRG 109 9**************************************************************999.........******* PP XXXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkkse 103 +k+ll++i r+ks+ GSMUA_Achr4P04500_001 110 QKHLLKNISRRKST 123 *********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.1E-39	22	115	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.33E-35	27	120	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.7E-62	27	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.3E-20	31	54	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.6E-32	31	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.3E-20	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	70	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.3E-20	82	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MDGVGGDGGG AQTAAATTAN ASLNGGAPPP FLSKTYEMVD DPATDAIVSW GSANNSFVVW 60 NTTEFARDLL PKYFKHNNFS SFVRQLNTYG FRKVDPDQWE FANEGFLRGQ KHLLKNISRR 120 KSTHPHNQQQ QPQTQSSIEV GKFGMEEEIE RLKRDKNVLM QELVRLRQQQ QATDQQLNTL 180 GQRLQGMEQR QQQMMSFLAK AMQSPGFLAQ LVQQNDSNRR IVGVNKKRRL PRQENKVDGE 240 SAVHDGQIIK YQPLINEAAK AMLMQILKFD TSPRLESFGN SQNLLLENFS SPVEAFDGRS 300 SLKRISGVTL SEVPATDMVA TTEMPNMNTG AGYIGPTGGN IPMNPEFMDQ LAGIDTEKFS 360 FDTDVDILND DEKLPSINDP FWEQFLTASP LLGDAEEVDS GIHETEEMRL ESGDDWGSSP 420 NMDHLTEQMG HLTSETNRH

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MDGVGGDGGG AQTAAATTAN ASLNGGAPPP FLSKTYEMVD DPATDAIVSW GSANNSFVVW  60
NTTEFARDLL PKYFKHNNFS SFVRQLNTYG FRKVDPDQWE FANEGFLRGQ KHLLKNISRR  120
KSTHPHNQQQ QPQTQSSIEV GKFGMEEEIE RLKRDKNVLM QELVRLRQQQ QATDQQLNTL  180
GQRLQGMEQR QQQMMSFLAK AMQSPGFLAQ LVQQNDSNRR IVGVNKKRRL PRQENKVDGE  240
SAVHDGQIIK YQPLINEAAK AMLMQILKFD TSPRLESFGN SQNLLLENFS SPVEAFDGRS  300
SLKRISGVTL SEVPATDMVA TTEMPNMNTG AGYIGPTGGN IPMNPEFMDQ LAGIDTEKFS  360
FDTDVDILND DEKLPSINDP FWEQFLTASP LLGDAEEVDS GIHETEEMRL ESGDDWGSSP  420
NMDHLTEQMG HLTSETNRH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	7e-28	29	123	18	123	Heat shock factor protein 1
5d5u_B	8e-28	29	120	27	129	Heat shock factor protein 1
5d5v_B	8e-28	29	120	27	129	Heat shock factor protein 1
5d5v_D	8e-28	29	120	27	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009395311.1	0.0	PREDICTED: heat stress transcription factor A-1-like
Swissprot	Q84T61	1e-177	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	M0SL17	0.0	M0SL17_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P04500_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-123	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]